Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02767 ATGGCTTCATGGTTTTGCTGCGGAAAAGTTTCGAACCGCTCACGGAGAGGGAAAGAACAACCCACATGGCGGGTGTTTTCTTTGAAGGAATTACATTCTGCTACGAATAATTTCAACTATGACAACAAGCTTGGAGAAGGAAGCTTTGGCAGTGTGTACTGGGGCCAACTTTGGGATGGATCACAAATTGCGGTGAAAAGATTGAAAGTTTGGAGCAACAGAGCTGAGACAGAATTCACAGTTGAGCTTGAAATCTTAGCAAGAATACGACACAAGAATCTTCTCAGTCTTCGTGGCTACTGTGAAGAAGGACAGGAACGGTTAATTGTGTATGAATATATGCAAAATCTGAGTCTCCACTCTCATCTTCACGGACATCATTCATTCGAATGCTCTCTGGATTGGAATCGTCGGATGAACATCACAATTGGTTCTGCTGAAGGAATTGTGTACCTTCACCACCAAGCAAGACCACATATCATCCATAGGGATATTAAATCAAGCAATGTGTTGCTGGATTCTGATTTCAAGGCCAGGGTTGCTGATTTTGGGTTTGCTAAGTTGATCCCTGATTGGGCCACACACGTGAGTACAAGAGTTAAGGGAACTATTGGTTACCTTGCACCAGAATATGCTATGTTGGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGTGTTCTTCTGCTAGAACTCGCTAGTGGCAGAAGACCAACAGAAAAGCTCAGTTCCACGGTGAGGCGATCGATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTTAGTGAAATTGCTGATCCAAGACTAAATGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTTGTTTTAGTTGGTCTTATGTGTGCTCAGGATCTGCCTGAGAAGAGACCAACCATGCTTGATGTGGTAGAGCTACTCAAGGGAGAGTCTAGGGATAGATTTTCTCATATAGAGAACAGTGACATGTTCAGAAATCCTCTAGCTGCAGAAACCAATAATGGAACATCATTGGCTGATGACAGATTAGACTGTATCTCAGAAGAAAAAGAATTAGAACGTCCATTGAGAGAAAATGCTGAACTATGA 1095 0.4228 MASWFCCGKVSNRSRRGKEQPTWRVFSLKELHSATNNFNYDNKLGEGSFGSVYWGQLWDGSQIAVKRLKVWSNRAETEFTVELEILARIRHKNLLSLRGYCEEGQERLIVYEYMQNLSLHSHLHGHHSFECSLDWNRRMNITIGSAEGIVYLHHQARPHIIHRDIKSSNVLLDSDFKARVADFGFAKLIPDWATHVSTRVKGTIGYLAPEYAMLGKANESCDVYSFGVLLLELASGRRPTEKLSSTVRRSIVDWALPLVCEKKFSEIADPRLNGNYVEEELKRVVLVGLMCAQDLPEKRPTMLDVVELLKGESRDRFSHIENSDMFRNPLAAETNNGTSLADDRLDCISEEKELERPLRENAEL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02767 364 SUPERFAMILY Protein kinase-like (PK-like) 18 309 IPR011009 -
Vimu11g02767 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 324 - -
Vimu11g02767 364 SMART serkin_6 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02767 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vimu11g02767 364 Gene3D Transferase(Phosphotransferase) domain 1 114 327 - -
Vimu11g02767 364 Pfam Protein tyrosine and serine/threonine kinase 40 308 IPR001245 GO:0004672|GO:0006468
Vimu11g02767 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 114 325 - -
Vimu11g02767 364 Gene3D Phosphorylase Kinase; domain 1 8 113 - -
Vimu11g02767 364 ProSiteProfiles Protein kinase domain profile. 38 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02767 364 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Vimu11g02767 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 10 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02767 Vimu-Chr11 47940847 47943046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02767 11 305 Trihelix Transcription Factor Family AT1G68690 47.492 2.83e-90 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vimu11g02767 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02767 - - gmx:100814204 651.744