Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu11g02748 | ATGGAGGAGTCTGGCGAAAACTGGCCTTCTGATTCTTACCTGGAAGTAGACGACGACGTTAAGGATTTGTGTTTCGATGATGAAGAATTCGCGAGCGAAGAGGATGACGGAGATTCCTTTCCTGAGATGAAAAATACCGACAGAAAACAGCGACAACAGAAACTCAGGGAGAGGTTCCTTGCACTGTCGGCAACCATACCTGGTTTCCAAAAGATGGACAAGACATCGATCCTAGACAAAGCTAGCAACTACGTGAGAGAGCTTGAGCAACGAGTGAGAGAGCTGGAACAAGAAGTTCAATCGAACAAGGTTTGTGCGAGCAGCAGCAGTTGCTACGAAGTGAACTCCAATGGACCAAATGCAATTCTTCCAGAAGTGAAAGTGAGAGTGTTACAGAAGGAAGTGCTGATAATAGTTCACTGTGAGAAACAGAAAGGAATCGTGCTCAAAATACTATCACACCTCGAGAATATCAATCTCTCTGTACTCAACAGCAGCGTCCTGCGATTTGGAAAATCTACCATCGACATCACCATCATTGCTCAGATGGGTGAGGGATACCAGATGGGAGTGGATGAGCTGGTGGAGACACTGAGATTAATGATATTGAATCAGTAG | 618 | 0.4531 | MEESGENWPSDSYLEVDDDVKDLCFDDEEFASEEDDGDSFPEMKNTDRKQRQQKLRERFLALSATIPGFQKMDKTSILDKASNYVRELEQRVRELEQEVQSNKVCASSSSCYEVNSNGPNAILPEVKVRVLQKEVLIIVHCEKQKGIVLKILSHLENINLSVLNSSVLRFGKSTIDITIIAQMGEGYQMGVDELVETLRLMILNQ | 205 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu11g02748 | 205 | SMART | finulus | 45 | 94 | IPR011598 | GO:0046983 | |
Vimu11g02748 | 205 | Coils | Coil | 78 | 105 | - | - | |
Vimu11g02748 | 205 | MobiDBLite | consensus disorder prediction | 25 | 48 | - | - | |
Vimu11g02748 | 205 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 39 | 88 | IPR011598 | GO:0046983 | |
Vimu11g02748 | 205 | Pfam | Helix-loop-helix DNA-binding domain | 44 | 89 | IPR011598 | GO:0046983 | |
Vimu11g02748 | 205 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 44 | 103 | IPR036638 | GO:0046983 | |
Vimu11g02748 | 205 | Gene3D | - | 43 | 108 | IPR036638 | GO:0046983 | |
Vimu11g02748 | 205 | PANTHER | BHLH TRANSCRIPTION FACTOR | 48 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu11g02748 | Vimu-Chr11 | 47765676 | 47769704 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu11g02748 | 49 | 204 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G37850 | 38.728 | 1.32e-29 | 110 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vimu11g02748 | HLH | 5.4e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu11g02748 | - | - | vum:124835915 | 341.658 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu11g02748 | 11 | 47765676 | 47769704 | Vimu4g00082 | 4 | 452192 | 453960 | PCT |