Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02748 ATGGAGGAGTCTGGCGAAAACTGGCCTTCTGATTCTTACCTGGAAGTAGACGACGACGTTAAGGATTTGTGTTTCGATGATGAAGAATTCGCGAGCGAAGAGGATGACGGAGATTCCTTTCCTGAGATGAAAAATACCGACAGAAAACAGCGACAACAGAAACTCAGGGAGAGGTTCCTTGCACTGTCGGCAACCATACCTGGTTTCCAAAAGATGGACAAGACATCGATCCTAGACAAAGCTAGCAACTACGTGAGAGAGCTTGAGCAACGAGTGAGAGAGCTGGAACAAGAAGTTCAATCGAACAAGGTTTGTGCGAGCAGCAGCAGTTGCTACGAAGTGAACTCCAATGGACCAAATGCAATTCTTCCAGAAGTGAAAGTGAGAGTGTTACAGAAGGAAGTGCTGATAATAGTTCACTGTGAGAAACAGAAAGGAATCGTGCTCAAAATACTATCACACCTCGAGAATATCAATCTCTCTGTACTCAACAGCAGCGTCCTGCGATTTGGAAAATCTACCATCGACATCACCATCATTGCTCAGATGGGTGAGGGATACCAGATGGGAGTGGATGAGCTGGTGGAGACACTGAGATTAATGATATTGAATCAGTAG 618 0.4531 MEESGENWPSDSYLEVDDDVKDLCFDDEEFASEEDDGDSFPEMKNTDRKQRQQKLRERFLALSATIPGFQKMDKTSILDKASNYVRELEQRVRELEQEVQSNKVCASSSSCYEVNSNGPNAILPEVKVRVLQKEVLIIVHCEKQKGIVLKILSHLENINLSVLNSSVLRFGKSTIDITIIAQMGEGYQMGVDELVETLRLMILNQ 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02748 205 SMART finulus 45 94 IPR011598 GO:0046983
Vimu11g02748 205 Coils Coil 78 105 - -
Vimu11g02748 205 MobiDBLite consensus disorder prediction 25 48 - -
Vimu11g02748 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Vimu11g02748 205 Pfam Helix-loop-helix DNA-binding domain 44 89 IPR011598 GO:0046983
Vimu11g02748 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 103 IPR036638 GO:0046983
Vimu11g02748 205 Gene3D - 43 108 IPR036638 GO:0046983
Vimu11g02748 205 PANTHER BHLH TRANSCRIPTION FACTOR 48 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02748 Vimu-Chr11 47765676 47769704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02748 49 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.728 1.32e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02748 HLH 5.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02748 - - vum:124835915 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02748 11 47765676 47769704 Vimu4g00082 4 452192 453960 PCT