Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02747 ATGATGGAGGACTCGTGGCAAAACTGGCTCTCTCATTTGGGAACGAGTGAAAACTTTGGCTGCACCACCATTGATGAGATGCTGTGGTTGAATAGTACTTGGCAGGGATGTGATAGCTCCAATAATGAGGTAGCATGTATGGAGTTAAAAGATGAACAGTCAGATTGTTGTTGGCGTAAAAGGGGTGTGGAGAAGCATCAGGATTTGGAGGCAAAGGGAAGAGAGAAGAAAAGAACAAAAAGGGTAAGAACCTCTTCTGAGATAGAATATCACATCATCTCTGAGAGAAAAAGGAGACAGGATATATCAGAGAAATTCATAGCACTCTCAGCTACCATACCTGGCTTGAAGAAGATAGACAAGGCATCAATCCTTGGAGAAGCCATAAAGTACATGCGACAACTCCAACAACGCATAGCAGAGTTGGAAAAAGCGAGCAATATTAATAACAGTGTAATAAAGTCGTTTATCATAGCCAAATCACACCTTTGTTCAGCATCATGTGAAGCAAATTCTACCATTGAAATGCTCCCTGAAGTTGAAGCAAGTGGGTTGGAGAATGAAGTGCTGATTAGAATCTACTGTGAGAAACGAAAGGACATCTTGCTAAACCTAATGACCCTTCTAAAAGGTGTTCATCTCTCAGTAACCAGTAGCAGTGTACTGCCATTTGGAAACTCTCTTCTCAACATCGTCATTGTTGCTCGGATGAGTGAGGAGTACAACTTGACGGTGACAGATTTGGTTAAGACTTTGAAGCAGAATCTTTCCAAGTTCTACGTGTGA 786 0.4173 MMEDSWQNWLSHLGTSENFGCTTIDEMLWLNSTWQGCDSSNNEVACMELKDEQSDCCWRKRGVEKHQDLEAKGREKKRTKRVRTSSEIEYHIISERKRRQDISEKFIALSATIPGLKKIDKASILGEAIKYMRQLQQRIAELEKASNINNSVIKSFIIAKSHLCSASCEANSTIEMLPEVEASGLENEVLIRIYCEKRKDILLNLMTLLKGVHLSVTSSSVLPFGNSLLNIVIVARMSEEYNLTVTDLVKTLKQNLSKFYV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02747 261 Coils Coil 125 145 - -
Vimu11g02747 261 Gene3D - 83 155 IPR036638 GO:0046983
Vimu11g02747 261 PANTHER BHLH TRANSCRIPTION FACTOR 48 258 - -
Vimu11g02747 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 135 IPR011598 GO:0046983
Vimu11g02747 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 149 IPR036638 GO:0046983
Vimu11g02747 261 Pfam Helix-loop-helix DNA-binding domain 91 136 IPR011598 GO:0046983
Vimu11g02747 261 SMART finulus 92 141 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02747 Vimu-Chr11 47757487 47758526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02747 63 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.713 9.32e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02747 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02747 - - gmx:100778916 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00082 4 452192 453960 Vimu11g02747 11 47757487 47758526 PCT
Vimu11g02747 11 47757487 47758526 Vimu4g00081 4 445704 448203 PCT