Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02746 ATGGATTGCCAGAACGAGTTCTTCTACGACTATGACCCTATCAACGATGACTGTGATGATTTCTTCTCCGACATCATCCTTCAGCAGACACCGCCCACGCCGTTCTCCTCCGAGAGCGAAAGCGACCACTCCGTTCGCGCTTCCAACACCGTCCACAACACTTCCTTCCTCCCCAGCACCGCCGTTAACGCCGTCGCTTCCAAACGCTCCGCTCCCAGGACTTACATTCTCTCCTTCGATAGCTCAACGGTGGTACCCGCCACACCCGAACCCTCCGTCCCTTCTTCCCTTTTACCCGCTAAACGGACCCTCCACACTCAAAACCCCACAACCCGGCCCAATCAAGCATCCAAGAGAACCCGAACCTCTTCTCAGACCGTCGATCACATAATGGCCGAGAGAAAGAGGAGGCAAGAACTCACCGAGAGATTCATAGCACTCTCAGCCACCATTCCCGGCTTGAACAAGACGGACAAGGCTTCTGTGCTTCGAGCAGCGATCGATTATGTGAAACAACTCAAAGAAAAGGTAGATGAACTAGAGAAGCAAGGCAGAAAGAGTGCAGCAGAGACAGTAATATTGGTGAATAAAACCGACTCGATCAATGGAAACGAATATAGCAGCAGCATCCTTCCTGAGATGGAAGCGAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAAGAATATGGTGTTGAGCTGAAAATACTGGACCATCTTGAAAATCTTCATCTCTGTGTCACCGGTAGCAGTGTTTTGCCATTTGGGAATTCTGCTCTCTGCATTACCATCACAGCTCAGATGGATGAGGAGTATGAGATGACAGTGAATGATCTGGTGAAAAACCTGAGAGAAGTTCTATCGAAGTCTCATTTGGTAACTGACAGTGATCCGTACTAG 909 0.4972 MDCQNEFFYDYDPINDDCDDFFSDIILQQTPPTPFSSESESDHSVRASNTVHNTSFLPSTAVNAVASKRSAPRTYILSFDSSTVVPATPEPSVPSSLLPAKRTLHTQNPTTRPNQASKRTRTSSQTVDHIMAERKRRQELTERFIALSATIPGLNKTDKASVLRAAIDYVKQLKEKVDELEKQGRKSAAETVILVNKTDSINGNEYSSSILPEMEARVLGKEVLIEIHCEKEYGVELKILDHLENLHLCVTGSSVLPFGNSALCITITAQMDEEYEMTVNDLVKNLREVLSKSHLVTDSDPY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02746 302 Pfam Helix-loop-helix DNA-binding domain 128 174 IPR011598 GO:0046983
Vimu11g02746 302 Coils Coil 163 190 - -
Vimu11g02746 302 MobiDBLite consensus disorder prediction 85 127 - -
Vimu11g02746 302 Gene3D - 121 193 IPR036638 GO:0046983
Vimu11g02746 302 PANTHER BHLH TRANSCRIPTION FACTOR 32 292 - -
Vimu11g02746 302 SMART finulus 130 179 IPR011598 GO:0046983
Vimu11g02746 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 194 IPR036638 GO:0046983
Vimu11g02746 302 MobiDBLite consensus disorder prediction 99 127 - -
Vimu11g02746 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02746 Vimu-Chr11 47751882 47753403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02746 81 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.441 4.79e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02746 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02746 - - vun:114166804 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00081 4 445704 448203 Vimu11g02746 11 47751882 47753403 PCT