Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02745 ATGGGGGAGCCATGCCAAAAATATTGGTTCTCTGATATGGATATACAAGATTTTGATTTCTTTAACCAAAGCCACAACAAGATTGAGTCACTTGATGATGAGGATCAGATCTTTCAGGAGATCATGCAGCAATCAGCTTTCTCTTCTGACAGTGAAACTCACTCTCCCAAAGATCAAAGCAAATCAACCTACGCTGCCACAGCACTCACCAGCAATAAGAGCAGCAACCTTGTGATGAAGAGCAACAGCTCCAATAATTTCCTCTTCTCATCACAACTTGCACCAGAGAAACCTGCCACAGCCATTTCTCCAACTGCGTACATTCTATCATTCAATGACTCCACCGTAGTTGCGGCTACGTGCCAAACCTATGATGGAAAACAGCCGTACCAAGAGGATGCAGTTGCAGGGAGTGGTGGCGCGTGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATGAAATTGAACCTAAGACCATCTCAGCAACAAGAAAAGGTAGAAGTTCTGCAGAGACACTAGACCATATAATGACTGAGAGAAAAAGGAGACGCGAACTGACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATTGACAAGGCCACCATACTTTGCGAAGCAATCACTTATGTGAAACGACTTAAAGAACGTGTAAGAGAACTGGAAGAACAATGTAAGAGAACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCAACATTATATCTACTGATAAAGGCACAAGCTCAGGTGCAACGAAATCTGATGAATGCTATAAAACCAATGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAGGATGTACTGATCCGGATTCACTGCAAGATACAACATGGAATTTTGATCAGAATTTTGGATTATCTTAATACTCTTGATCTCTCCACAACCAGCAACAGTGTAATGCCATTTGGAAGTTCTACTCTTGACATCAGCATTGTTGCTCAGATGGGTGAAAAATTCAACGCAACAATGGCTGATCTAGTGAAAAACCTGAGACTGGTTCTGTTGCAGTCATCTGAAGTTCAAAAATCATCCATGCTAGTGAATCAATGA 1095 0.4201 MGEPCQKYWFSDMDIQDFDFFNQSHNKIESLDDEDQIFQEIMQQSAFSSDSETHSPKDQSKSTYAATALTSNKSSNLVMKSNSSNNFLFSSQLAPEKPATAISPTAYILSFNDSTVVAATCQTYDGKQPYQEDAVAGSGGACLPSKGVSEKHEIEPKTISATRKGRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILCEAITYVKRLKERVRELEEQCKRTRVESVSFVHQRSNIISTDKGTSSGATKSDECYKTNEALPTVEARVFKKDVLIRIHCKIQHGILIRILDYLNTLDLSTTSNSVMPFGSSTLDISIVAQMGEKFNATMADLVKNLRLVLLQSSEVQKSSMLVNQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02745 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Vimu11g02745 364 SMART finulus 175 224 IPR011598 GO:0046983
Vimu11g02745 364 Gene3D - 161 235 IPR036638 GO:0046983
Vimu11g02745 364 MobiDBLite consensus disorder prediction 45 64 - -
Vimu11g02745 364 PANTHER BHLH TRANSCRIPTION FACTOR 42 352 - -
Vimu11g02745 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 240 IPR036638 GO:0046983
Vimu11g02745 364 Coils Coil 215 235 - -
Vimu11g02745 364 Pfam Helix-loop-helix DNA-binding domain 174 218 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02745 Vimu-Chr11 47742137 47744172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02745 166 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.022 2.61e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02745 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02745 - - gmx:100777846 499.59