Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02744 ATGAACGACGAAATCTACTTACACGCGCCAACCACCGCCACCGCCGCTAACGTTTTGCTTCCGAAACCTGAAACGGTGTCGTCACACGAAACGGGGCTCGAAGGGATTGCCGCGGTTGTTGGAGAGCACGTTCTTTTCGGAACGTCGTCGACGTTGCATGTCCCAGAGACGCCGAAGAAAACGGCTGGGGTGTCGGTGAACAAGAGTTACCGAGGAGTGAGGAAGCGACCGTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGGCGGTGCCGCCACTGGCTGGGGACGTTCGACACGGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGAAGACTTAGAGGCGCGAAGGCGAGGACAAACTTCAAGATACCCTCGGTGTTGCCTCTTTCTCCGACTTCGGAAGGTGGTGTCGTGAAGCCGAAAGCTACCGGCAATAACGCCAGGAAGTGTTCTTCTGTGGAACAATTGTTCAGTGGTGCACCTCAAGTTCGAAGAAACGATGATGGTGGTGAGAATGTGAATTTGAAGGTGGGTGTGAGGAACAGTAGAATGGTTATTTAG 573 0.5672 MNDEIYLHAPTTATAANVLLPKPETVSSHETGLEGIAAVVGEHVLFGTSSTLHVPETPKKTAGVSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPTSEGGVVKPKATGNNARKCSSVEQLFSGAPQVRRNDDGGENVNLKVGVRNSRMVI 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02744 190 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Vimu11g02744 190 CDD AP2 68 127 IPR001471 GO:0003700|GO:0006355
Vimu11g02744 190 FunFam Ethylene-responsive transcription factor 2 68 127 - -
Vimu11g02744 190 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 57 149 - -
Vimu11g02744 190 SUPERFAMILY DNA-binding domain 69 126 IPR016177 GO:0003677
Vimu11g02744 190 Coils Coil 102 122 - -
Vimu11g02744 190 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Vimu11g02744 190 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vimu11g02744 190 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Vimu11g02744 190 Pfam AP2 domain 69 118 IPR001471 GO:0003700|GO:0006355
Vimu11g02744 190 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02744 Vimu-Chr11 47734903 47735475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02744 21 132 AP2-EREBP Transcription Factor Family AT1G80580 61.789 1.96e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g02744 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02744 - - gmx:102667667 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02744 11 47734903 47735475 Vimu11g02744 11 47734903 47735475 ECH