Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02737 ATGATTGTATCGCAGGAGCGAATTCCTTTGGACCAAGTCTTCGAACAATTGACCTGTTCGAAGGAGGGTCTCACGAATGAGGAAGGCCGAAAGAGGCTGGAACTTTTTGGACCCAATAAGTTAGAAGAAAAGAAGGAAAGCAAGTTGTTGAAATTCTTGGGATTTATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCTGCTATCATGGCAATTGCACTGGCAAATGGAGGGGGCAAACCCCCAGATTGGCAGGATTTTATAGGAATACTGGCACTGCTTGTAATCAACTCTACCATTAGTTTTATTGAAGAGAATAATGCAGGCAATGCAGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACTAAGGTTCTAAGAGATGGGAAGTGGAGTGAGGAAGAGGCTGCTATATTGGTACCCGGAGACATCATCAGCATCAAGTTAGGAGACATAGTGCCTGCTGATGCGCGTCTCTTAGAAGGAGATCCTCTCAAGATCGATCAATCTGCGTTGACTGGTGAATCATTGCCTGTTTCAAAAAATCCAGGTGATGAAGTCTTCTCTGGTTCTACTGTTAAGCAAGGAGAGCTTGAGGCTGTTGTAATTGCTACTGGAGTACATACCTTTTTTGGTAAAGCTGCTCACTTGGTAGACAGCACCAACCAAGAAGGCCACTTTCAAAAGGTGTTGACAGCCATTGGTAACTTTTGCATTTGTTCAATAGCGGTTGGTATGGTTATAGAAGTTATTGTTATGTATCCAATTCAGCACCGACCCTACAGGAATGGAATTGACAATCTATTGGTCCTTCTCATTGGAGGCATTCCGATTGCCATGCCAACTGTCTTGTCAGTAACCATGGCTATTGGTTCCCATAGACTCTCCCAGCAAGGTGCCATTACTAAGAGAATGACAGCCATTGAGGAAATGGCTGGAATGGATGTTTTATGCAGTGACAAGACTGGCACTTTAACTCTGAACAAACTAACTGTAGACAAGAGTTTAATTGAGGTTTTCGGAAAAAATGCTGATAAGGATACTGTAATTTTACTTGGAGCTCGAGCTTCTAGGGTGGAGAATCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGACCCAAGAGAGGCAAGAGATGGTATCAAAGAGGTCCATTTCTTACCCTTCAATCCAGTAGACAAGCGCACCGCCATAACATATATCGATGACAACGGAAATTGGCATAGAGCAAGCAAAGGCGCACCGGAGCAGATTGTAGAGCTCTGTCGTCTTCGGGAAGATGTGAAGAAAAGAGTTCATGGCATTATCGGAAAATTTGCTGACAGAGGTCTCCGTTCCCTTGCTGTTGCCAGACAAGAAGTTCCAGAGAAAACCAAGGAGAGTAGTGGAGGAGCGTGGGAATTTGTGGGTCTCTTGCCTTTGTTTGACCCACCTAGACACGATAGTGCAGAGACAATTAAACGTGCTCTTCATCTTGGGGTGAACGTCAAGATGATTACCGGCGATCAATTAGCTATCGGGAAGGAGACTGCTCGGAGACTTGGTATGGGAAGTAACATGTACCCATCTTCCTCCCTTCTTGGCGATCGCAAGGATGAATCTGTTGCTGCACTTCCCGTCGAAGAGCTTATTGAACAGGCCGATGGATTTGCTGGTGTTTTTCCTGAGCACAAATACGAGATTGTGAAAATACTTCAAGAGAGAAAACACATATGTGGAATGACAGGAGACGGTGTTAATGATGCTCCTGCCCTCAAAAAGGCAGATATTGGAATTGCAGTAGCTGATGCAACGGATGCAGCTAGAGGTGCATCCGACATAGTACTAACAGAGCCTGGCCTCAGTGTGATTGTGAGTGCAGTTTTGACCAGTAGATCCATTTTTCAGAGAATGAAGAACTACACCATTTACGCAGTTTCCATCACAATAAGGATTGTGTTGGGCTTTTTACTGATTGCACTTATATGGAAATTTGATTTCTCACCCTTCATGGTTTTAATTATTGCAATACTAAATGACGGAACAATCATGACCATCTCGAAAGACAGAGTAAAGCCATCCCCTCTGCCTGATTCATGGAAGTTGGAAGAGATTTTTGCCACAGGTGTAGTTCTTGGTACTTACCTCGCTCTCATGACGGTTGTCTTCTTCTGGGCTGCTCACGGTTCTGATTTCTTCACCGAAAAATTTGGTGTTAGATCTATCAGATCTAACCCGGATGAGCTTACCGCGGCTGTTTACCTTCAAGTAAGTATTGTAAGTCAGGCTCTTATATTTGTAACTCGATCAAGGAGTTGGTCTTACTGTGAGCGCCCTGGCTTTCTACTTATCACCGCATTTATAGTGGCACAACTGATTGCCACAGTTATAGCCGTTTATGCAAATTGGGAATTTGCAAGGATGAAAGGGATTGGATGGGGCTGGGCTGGTGTCATTTGGATCTACAGTATCATCTTCTACATCCCATTGGATATTTTGAAATTCGTAATTCGATATTTCTTGAGTGGCAAGGCATGGAATAATGTCACCGAAAATAGGACTGCATTCTCATCAAAGAAGGATTATGGAAAGGAAGAACGAGAAGCACAATGGGCTATTGCTCAACGCACATTACATGGGTTGAATCCTCCTGAAAACGAACGCACTTTTTCAGAAAGAAATAACTATCGTGAATTATCTGAAATTGCAGAACAGGCAAGAAAACGAGCTGAAGTTGCAAGATTGCGGGAACTTCACACATTGAAGGGACACGTGGAGTCGGTTGTGAAATTGAAAGGACTAGACATTGATACAATTCAACAGCACTACACTGTCTGA 2823 0.4375 MIVSQERIPLDQVFEQLTCSKEGLTNEEGRKRLELFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFIGILALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVSKNPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNFCICSIAVGMVIEVIVMYPIQHRPYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFGKNADKDTVILLGARASRVENQDAIDACIVGMLGDPREARDGIKEVHFLPFNPVDKRTAITYIDDNGNWHRASKGAPEQIVELCRLREDVKKRVHGIIGKFADRGLRSLAVARQEVPEKTKESSGGAWEFVGLLPLFDPPRHDSAETIKRALHLGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGDRKDESVAALPVEELIEQADGFAGVFPEHKYEIVKILQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRSIFQRMKNYTIYAVSITIRIVLGFLLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLEEIFATGVVLGTYLALMTVVFFWAAHGSDFFTEKFGVRSIRSNPDELTAAVYLQVSIVSQALIFVTRSRSWSYCERPGFLLITAFIVAQLIATVIAVYANWEFARMKGIGWGWAGVIWIYSIIFYIPLDILKFVIRYFLSGKAWNNVTENRTAFSSKKDYGKEEREAQWAIAQRTLHGLNPPENERTFSERNNYRELSEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02737 940 Gene3D - 889 940 - -
Vimu11g02737 940 NCBIfam HAD-IC family P-type ATPase 90 339 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02737 940 NCBIfam HAD-IC family P-type ATPase 551 666 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02737 940 FunFam Plasma membrane ATPase 469 625 - -
Vimu11g02737 940 Coils Coil 891 911 - -
Vimu11g02737 940 SMART Cation_ATPase_N_a_2 4 76 IPR004014 -
Vimu11g02737 940 Gene3D - 330 477 IPR023299 GO:0000166
Vimu11g02737 940 SFLD C1.7: P-type atpase like 300 628 - -
Vimu11g02737 940 ProSitePatterns E1-E2 ATPases phosphorylation site. 320 326 IPR018303 -
Vimu11g02737 940 NCBIfam plasma-membrane proton-efflux P-type ATPase 23 795 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu11g02737 940 PRINTS H+-transporting ATPase (proton pump) signature 577 593 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02737 940 PRINTS H+-transporting ATPase (proton pump) signature 749 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02737 940 PRINTS H+-transporting ATPase (proton pump) signature 549 565 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02737 940 PRINTS H+-transporting ATPase (proton pump) signature 608 633 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02737 940 PRINTS H+-transporting ATPase (proton pump) signature 434 452 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02737 940 Gene3D - 121 205 - -
Vimu11g02737 940 SUPERFAMILY Calcium ATPase, transmembrane domain M 6 837 IPR023298 -
Vimu11g02737 940 Pfam Cation transporter/ATPase, N-terminus 8 70 IPR004014 -
Vimu11g02737 940 Pfam haloacid dehalogenase-like hydrolase 314 591 - -
Vimu11g02737 940 FunFam ATPase 4 plasma membrane-type 563 804 - -
Vimu11g02737 940 FunFam Plasma membrane ATPase 121 205 - -
Vimu11g02737 940 Pfam E1-E2 ATPase 120 297 - -
Vimu11g02737 940 CDD P-type_ATPase_H 23 830 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu11g02737 940 Gene3D - 83 804 - -
Vimu11g02737 940 PANTHER CALCIUM-TRANSPORTING ATPASE 7 872 - -
Vimu11g02737 940 SFLD p-type atpase 300 628 IPR044492 -
Vimu11g02737 940 PRINTS P-type cation-transporting ATPase superfamily signature 168 182 - -
Vimu11g02737 940 PRINTS P-type cation-transporting ATPase superfamily signature 600 612 - -
Vimu11g02737 940 PRINTS P-type cation-transporting ATPase superfamily signature 472 483 - -
Vimu11g02737 940 PRINTS P-type cation-transporting ATPase superfamily signature 318 332 - -
Vimu11g02737 940 PRINTS P-type cation-transporting ATPase superfamily signature 577 596 - -
Vimu11g02737 940 PRINTS P-type cation-transporting ATPase superfamily signature 494 504 - -
Vimu11g02737 940 SUPERFAMILY Calcium ATPase, transduction domain A 121 218 IPR008250 -
Vimu11g02737 940 FunFam Plasma membrane ATPase 330 477 - -
Vimu11g02737 940 SUPERFAMILY HAD-like 314 624 IPR036412 -
Vimu11g02737 940 Gene3D - 315 614 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02737 Vimu-Chr11 47697505 47701780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02737 3 940 Primary Pumps ATPases AT3G42640 82.836 0.0 1597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02737 K01535 - gmx:100796279 1655.96