Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02723 ATGAGTGTGACAGGATCATCTTCTGGGCACCCTCAATTCATTGCCACCACTGGTAACAGAAGCTTGTCCAATGCGCCGTTGATTGAGAATCCAGACTCTGATCAAATTGTTGTACCTGATAGAACAAGCTGGAAAAACTTATTTGCATACGTGGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCTGGAAACTTTGAAACGGATCTTCAATCAGGAGCTCAATACAAATATGAGTTACTATGGATCATATTGGTGGCATCATGTGCTGCTCTTCTAATTCAAACAATGGCTGCTAATCTTGGGGTTGTCACTGGAAAGCATCTAGCTGAGCATTGTAGAGCTGAATATTCTCCATTGCCCAACTTCATCCTTTGGGTGATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGAACGGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGGTCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTTACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATACGCAAAGCCTGTGGCCAAAGAAGTTGTGACAGGTCTATTTGTTCCAAAACTTAATGGGAATGGTGCCACTGGTCTTGCAATTTCACTGCTTGGGGCAATGGTTATGCCGTGGGTTCCTCTTGTCTTCCTTCTGCAGCAATTTCTTTCTTCTGTCCCTCAATTTTACATGATAGAAAGTGCCTTTGCTCTTGCGGTGGCCTTCCTCATAAATATTTCTGTTATTTCTGTAAGTGGTGCAGTTTGCCATTCTTCAAACTTAAGCGCTGAAGATCAGAAAAGTTGTGAGGATTTGGATTTGAACAAAGCCTCCTTTTTATTAAGATGTGCTGATAAAATCAATGATGATATTCTTATGTGGTCCACACTAAGAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTGCTTGCCTCAGGGATTTCTTGATCTGCGACTGAAGTCATGGATTCGAAATCTGCTAACCAGATGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATAGGTGGCTCTGCTGGAGCTGGAGAGCTCATCATAATTGCATCAATGATCTTATCATTTGAACTTCCTTTTGCTCTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATTTCGGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAACATATACTATTTAATGACTAGCTTTGTGAAGTTGCTTCTTCATGCTCACATAAGAATTGTGGCTAAGGTATTTCTGGGGATATTAGGATTTTCTGGTGTGGCACTGTACATTGGAGGAATTGCATATTTAGTGTTTCGTAAAAATAAAAAGACTACACATGTTTTGACACTTAGAACATTGGAAGATCAGCAAATGGGTAATGCAGAAGGTGATGTATCAATGTATAGTCTGCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGAGTCCTCCAGAATTTGATTAA 1602 0.407 MSVTGSSSGHPQFIATTGNRSLSNAPLIENPDSDQIVVPDRTSWKNLFAYVGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGKHLAEHCRAEYSPLPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLVLLALQQYGVRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLNGNGATGLAISLLGAMVMPWVPLVFLLQQFLSSVPQFYMIESAFALAVAFLINISVISVSGAVCHSSNLSAEDQKSCEDLDLNKASFLLRCADKINDDILMWSTLRMSWANGVQNYLQLLCLPQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAVTWIIGSLIMGINIYYLMTSFVKLLLHAHIRIVAKVFLGILGFSGVALYIGGIAYLVFRKNKKTTHVLTLRTLEDQQMGNAEGDVSMYSLPREDIVSMQLPQKRSPPEFD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02723 533 PRINTS Natural resistance-associated macrophage protein signature 356 373 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g02723 533 PRINTS Natural resistance-associated macrophage protein signature 388 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g02723 533 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g02723 533 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g02723 533 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g02723 533 Pfam Natural resistance-associated macrophage protein 67 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g02723 533 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 410 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu11g02723 533 NCBIfam Nramp family divalent metal transporter 52 235 - -
Vimu11g02723 533 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 39 483 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02723 Vimu-Chr11 47615035 47619537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02723 15 526 Inorganic Solute Cotransporters AT1G15960 68.000 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02723 K21398 - gmx:100815628 832.787