Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02722 ATGGATCCGCAGAACGAATCCGACCAAGCAAACCCCAGAAACATAATCTTCGGTAAATACGAGATGGGGCGGGTGCTGGGGCAGGGAAACTTCGCCAAGGTGTACTACGGCAGAAACCTCGTCACCAACGACAACGTCGCCGTCAAGGTCATAAAGAAAGAGAAGCTGAAGAAAGAGCGACTGGTGAAGCAGATCAAGCGCGAGGTTTCTGTCATGAAAATGGTGCGGCATCCCCACATCGTTCAACTCAAGGAAGTCATGGCCACCAAAGGAAAAATCTTCCTCGTCATGGAATACGTTAAAGGCGGCGAGCTCTTCACCAAAGTCAACAAAGGAAAACTCTCCGAAGACCTCGCCAGAAAGTACTTCCAGCAACTCATCAGCGCCGTCGACTACTGCCACAGCCGCGGCGTCACCCACCGCGACCTCAAGCCGGAGAATCTCCTCTTGGACCAGAACGAGGACCTCAAAGTCTCCGACTTTGGACTCTCGGCGCTGCCGGAGCAGCGCCGCGCCGACGGCATGCTATTAACGCCGTGTGGGACCCCTGCTTACGTGGCGCCGGAGGTTCTGAAGAAAAAGGGCTACGACGGTTCAAAGGCTGATATATGGTCCTGTGGGGTAATTCTTTACGCCTTGCTCTGCGGCTATTTACCCTTCCAAGGTGAGAACGTTATGAGAATCTACCGAAAAGCGTTCAGAGCTCAGTATGAATTACCGGAATGGGTTTCGTCGCAGGCCAAAAATCTCATTTCGAATCTCCTCGTTGCTGATCCTGCCAAGAGGTATTCCATTCCCGATATAATGAAGGATCCATGGTTTCAATTCGGGTTCATGAGACCCATTGCCTTTTCGATTAAGGAATCCGAGGTAGAAGACAACATTGATTTCGAAGATGTGGACGAGGTCTCGATGAGGAAACCGGCGAGGCCGTTTTACAACGCGTTTGAGATAATCTCGTCCTTGTCACACGGGTTTGATCTGAGGAGTTTGTTTGAGACGAGGAAGCGGTCGCCGTCTATGTTCATCTGTAAATTTTCGGCTTCGGCGGTGATGGCGAAGGTGGAGGCTGCTGCAAAAAAGCTGAATTTTAAAGTTACGGGGAAGAAGGAGTTCGTGGTGAGAATGCAGGGGGCGGAAGAGGGGAGGAAGGGGAAGTTGGGAATGACGGTGGAGGTTTTCGAGGTGGCGCCGGAGGTGGCGGTGGTTGAGTTTTCAAAGTCTGGCGGCGACACTTTGGAGTATATTAAACTGTGTGAGGAACAAATAAGACCATCTCTGAAAGACGTTGTTTGGAGCTGGCAGGGTGATACCAACAATTAG 1323 0.5132 MDPQNESDQANPRNIIFGKYEMGRVLGQGNFAKVYYGRNLVTNDNVAVKVIKKEKLKKERLVKQIKREVSVMKMVRHPHIVQLKEVMATKGKIFLVMEYVKGGELFTKVNKGKLSEDLARKYFQQLISAVDYCHSRGVTHRDLKPENLLLDQNEDLKVSDFGLSALPEQRRADGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFRAQYELPEWVSSQAKNLISNLLVADPAKRYSIPDIMKDPWFQFGFMRPIAFSIKESEVEDNIDFEDVDEVSMRKPARPFYNAFEIISSLSHGFDLRSLFETRKRSPSMFICKFSASAVMAKVEAAAKKLNFKVTGKKEFVVRMQGAEEGRKGKLGMTVEVFEVAPEVAVVEFSKSGGDTLEYIKLCEEQIRPSLKDVVWSWQGDTNN 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02722 440 ProSiteProfiles NAF domain profile. 308 333 IPR018451 GO:0007165
Vimu11g02722 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vimu11g02722 440 Coils Coil 48 68 - -
Vimu11g02722 440 CDD CIPK_C 314 428 - -
Vimu11g02722 440 Pfam NAF domain 312 367 IPR004041 GO:0007165
Vimu11g02722 440 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vimu11g02722 440 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02722 440 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Vimu11g02722 440 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02722 440 FunFam Non-specific serine/threonine protein kinase 13 310 - -
Vimu11g02722 440 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 428 - -
Vimu11g02722 440 Gene3D Phosphorylase Kinase; domain 1 12 99 - -
Vimu11g02722 440 Gene3D Transferase(Phosphotransferase) domain 1 100 277 - -
Vimu11g02722 440 FunFam Non-specific serine/threonine protein kinase 309 432 - -
Vimu11g02722 440 Gene3D Kinase associated domain 1, KA1 309 433 - -
Vimu11g02722 440 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02722 440 SUPERFAMILY Protein kinase-like (PK-like) 16 327 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02722 Vimu-Chr11 47606103 47608537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02722 13 440 CBL-interacting serine-threonine protein kinases AT5G10930 62.989 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu11g02722 Pkinase 4.7e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02722 - - vun:114167214 790.03