Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02721 ATGAAGGCAGTGGATAGTAAGAAGACAGTGGAAGCTGAGAACAAGCTTAATGTTCCTAATGTTGCAAAGGAACAACCGCATGATGAAACCAAGGGTCATGAACCTGATGTTACTAGTAAGAGAGACGTCCAAATTTTGGATGATACAAAGTCGAACGGAAGGGCCATTCTGGATGGTGGAGTTATAAAAGGAACTGGTTCAAAAAGGAAATCATGTTCTGAAATTTCCATGAAACCAAAAATTTCAAGAGTTTATGTGAGGACCGCAGCATCTGACACCACCCTTGTTTTTCATTGTATGTGGTTTCAGATTGTGAAAGATGGGTACCAAGCATATTTCAAATGCTCTTTTGCTCCAAACTGCCCTGTAAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTCACAACCATCCCCAAGATTCTTCACAAATGGGGTCAAAATCAGGTTCTGGGAGTAGTGTGACCCTTGCTTCAGTGCCTTGTGCAGCTGCCACTCCAACACTTGTTACCCTTGACTTGACAAAATCTAAGGGTAGCAACGATTCCAAGAGCACGAAAACTAAATTAGCCACACCTAAAGTGCAGCAGGTTTTGGTGGAACGGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACATATAA 687 0.425 MKAVDSKKTVEAENKLNVPNVAKEQPHDETKGHEPDVTSKRDVQILDDTKSNGRAILDGGVIKGTGSKRKSCSEISMKPKISRVYVRTAASDTTLVFHCMWFQIVKDGYQAYFKCSFAPNCPVKKKVQRSVDDQSHNHPQDSSQMGSKSGSGSSVTLASVPCAAATPTLVTLDLTKSKGSNDSKSTKTKLATPKVQQVLVERMATSLTTDPNFRAALVAAISGRLLHI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02721 228 SMART WRKY_cls 105 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02721 228 MobiDBLite consensus disorder prediction 22 45 - -
Vimu11g02721 228 Gene3D WRKY domain 62 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g02721 228 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 46 224 IPR044810 GO:0003700
Vimu11g02721 228 MobiDBLite consensus disorder prediction 137 154 - -
Vimu11g02721 228 MobiDBLite consensus disorder prediction 128 154 - -
Vimu11g02721 228 Pfam WRKY DNA -binding domain 110 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02721 228 MobiDBLite consensus disorder prediction 1 45 - -
Vimu11g02721 228 SUPERFAMILY WRKY DNA-binding domain 107 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02721 Vimu-Chr11 47602880 47604562 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02721 69 227 WRKY Transcription Factor Family AT1G80840 43.229 5.09e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g02721 WRKY 2.7e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02721 - - gmx:100170678 203.756