Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02719 ATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCTCACAGAGTTCGTCAAGAACTTCCCAAGGAGGTAGAAAGCAAGCTTTTTTCTTTGGGAATGCCCAAGTTTAACGTGGAAGAATGTTGGGAATCCAAAAGGCCCATCAAAGATGAGTCTAACAGTGACTTGGAGGAGGAACTGAAACGGGTGACAGCAGAAAACAAGAAGTTGGCTGAAATGCTGTCGGTGGTGTGTGAGAACTACAACACTTTGCGAAGCCATTTGATGGAATATACGAGGAAAAATGGTGAAAAAGAGACCAGCCCGACATCAAAGAAAAGGAAGTCTGAAAGCAGCAACAACAATAGTATTTGTGTGATGGGAACTAACAATGGAAACTCCGAGAGCAGCTCCACTGATGAAGAATCTTGCAAGAAACCGAGGGAAGAAACCATGAAACCAAAAATTTCAAGAGTTTATGTCAGGACCGAAGCATCTGACAACACCCTTATTGTGAAAGATGGGTACCAGTGGAGGAAATATGGGCAAAAAGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCATTTGCTCCAAGCTGCCCTGTAAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTGGCTACTTATGAAGGGGAGCACAACCATCCCCAAGCTTCTTCACAAATGGAGGCAACATCAGGTTCTGGGCGTAGTGTGACCCTTGCTTCAGTGCCTTGTGCAGCTGCCACTCCAACACTCGTTACCCTTGACTTGACAAAATCTAAGGGCAGCAACGATTCCAAGAGCACGAAAACTAAAGTAGATACACCTAAAGTGCAGCAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACAATAATTGA 957 0.4399 MDCSSWINTSLDLNINPHRVRQELPKEVESKLFSLGMPKFNVEECWESKRPIKDESNSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYTRKNGEKETSPTSKKRKSESSNNNSICVMGTNNGNSESSSTDEESCKKPREETMKPKISRVYVRTEASDNTLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQASSQMEATSGSGRSVTLASVPCAAATPTLVTLDLTKSKGSNDSKSTKTKVDTPKVQQVLVEQMATSLTTDPNFRAALVAAISGRLLHNN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02719 318 MobiDBLite consensus disorder prediction 95 148 - -
Vimu11g02719 318 MobiDBLite consensus disorder prediction 95 110 - -
Vimu11g02719 318 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 314 IPR044810 GO:0003700
Vimu11g02719 318 Coils Coil 57 77 - -
Vimu11g02719 318 SMART WRKY_cls 169 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02719 318 Pfam WRKY DNA -binding domain 170 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02719 318 SUPERFAMILY WRKY DNA-binding domain 165 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g02719 318 MobiDBLite consensus disorder prediction 111 135 - -
Vimu11g02719 318 Gene3D WRKY domain 153 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g02719 318 ProSiteProfiles WRKY domain profile. 164 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02719 318 FunFam WRKY transcription factor 40 154 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02719 Vimu-Chr11 47592991 47594483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02719 4 318 WRKY Transcription Factor Family AT1G80840 52.280 1.73e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g02719 WRKY 3.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02719 - - gmx:100807966 519.235