LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g02712	ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGTATCCATCAAGCTCAAGTGGGATGAAAAAATTAAGGTTCAATTTAGATTCTCTTCCACTTCCTGGTCGTGGAAAAAAAAGAGCATCGAAATCGTTTAAGCTAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCACTCAAGAGTGGGGTGACTACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTGTTTGATCCTCAAGACAAGACCCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAATGAGCTAGCAAGTTTTGCTGTCACATTAAGAACAATATGCGATGCCGTTTATCTCATCCGCATAAGTTTTCAGTTCCGCACTGCTTACATTGCACCATCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACACAGATTGCTAAGAGATACTTACGACGTTATTTCATCATTGACTTCGTTTCTGTGCTCCCTATACCACAGAAGATTGCTTGCGGGCTTTTTCACGAACTACTAATTGTTAAAGGCCTAGGAATTTCTTCGAATGATATAAATGATGAACGAAGTTATATTTGCAAAATTTTTGTGCAAGAGATTGTAGTGTGGAAATATCTTTACAGATCAGGACGTGTAAAGGTCTTGGAAACAAAAACGTTACTGCTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTATACGTTTTTTACCTTTAGCATCTGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCACTGCTCGGGGCCATGTACTATTTGATATGGTATATGCTTGCTAGTCACATAACTGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAAAGCAGTTGAAGGGTGCAGTACACATTTCTTGTACTGTGCGAATTCGAACAAGCATCTGCCAGGGTATGACAGTTGGAGAAATGTTAGCGAAACTGTTCTGAAAAGTCAGTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGCATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGACTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCTGCAGAGGTTATGTTTTCCATAGTAATAGCTATCGCGGGGCTTATCCTTTTTGCTCTTCTGATCGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGATATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCATAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTCGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTGGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTCTTCAACAGAGGTCTTCTGAAGGAAAATGACTTCTGTGGAGAGGAGCTACTAACGTGGGCATTGGACCCAAAATCTGGTTCTAACTTGCCATCATCAACAAGAACTGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTAAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACGTGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGGAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGATGATTCTGCAAAAGCCTTGGTCAAGCATTCTGAAAAGTCTGCTTTTCCCTCTTCTAAGCTTGGACTTGCTACAACCGTCTATGCATCTCGCTTTGCTGCAAATGCACTTCGTGGTCATAGGCGTCGTGATTCAAGTTCCAAGGACATACTCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTATGATGAAAACTGA	2367	0.4229	MFDSGYKSQYIGGQKEKFVRLDDLDSNLSYPSSSSGMKKLRFNLDSLPLPGRGKKRASKSFKLGVKKGSDGLKTFGRSLKSGVTTWAVFPEDLKVSEKKVFDPQDKTLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTICDAVYLIRISFQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLRRYFIIDFVSVLPIPQKIACGLFHELLIVKGLGISSNDINDERSYICKIFVQEIVVWKYLYRSGRVKVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDTCWKNACKAVEGCSTHFLYCANSNKHLPGYDSWRNVSETVLKSQCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPAEVMFSIVIAIAGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKENDFCGEELLTWALDPKSGSNLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSAKALVKHSEKSAFPSSKLGLATTVYASRFAANALRGHRRRDSSSKDILKLQKPPEPDFSDYDEN	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g02712	788	FunFam	Cyclic nucleotide-gated ion channel 1	545	663	-	-
	Vimu11g02712	788	MobiDBLite	consensus disorder prediction	758	782	-	-
	Vimu11g02712	788	Gene3D	Jelly Rolls	545	665	IPR014710	-
	Vimu11g02712	788	SMART	cnmp_10	547	678	IPR000595	-
	Vimu11g02712	788	SUPERFAMILY	Voltage-gated potassium channels	102	469	-	-
	Vimu11g02712	788	SUPERFAMILY	cAMP-binding domain-like	477	667	IPR018490	-
	Vimu11g02712	788	ProSiteProfiles	IQ motif profile.	683	712	IPR000048	GO:0005515
	Vimu11g02712	788	ProSiteProfiles	cAMP/cGMP binding motif profile.	547	677	IPR000595	-
	Vimu11g02712	788	FunFam	Cyclic nucleotide-gated ion channel 1	474	538	-	-
	Vimu11g02712	788	Pfam	Cyclic nucleotide-binding domain	568	657	IPR000595	-
	Vimu11g02712	788	Gene3D	-	113	472	-	-
	Vimu11g02712	788	CDD	CAP_ED	547	678	IPR000595	-
	Vimu11g02712	788	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	92	782	-	-
	Vimu11g02712	788	Gene3D	Helix hairpin bin	474	538	-	-
	Vimu11g02712	788	MobiDBLite	consensus disorder prediction	758	788	-	-
	Vimu11g02712	788	Pfam	Ion transport protein	110	474	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g02712	Vimu-Chr11	47556219	47560117	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g02712	6	782	Ion Channels	AT1G15990	65.565	0.0	994

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g02712	K05391		-	gmx:100810453	1289.25