Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02705 ATGGTGGTGTGGGTGAGGTGGCGCGTCACTATTGGTGGAGAGAGTGGGCGTGTGGGAGCATTTTGGATAAGAGAGATGATCATCAACGTGAAGGAATCGACGATGGTGCGGCCGGCGGAAGAGGGGGACCGGCGGGTGGTGTGGAACTCGAACGTGGACCTGGTGGTGCCGAATTTTCACACGCCCAGCGTCTACTTCTATAGAGCGAACGGCGCGTCCAACTTTTTCGAGGGGAAGGTTCTGAAGGAGGCACTGAGCAAGGTGCTGGTGCCCTTCTACCCAATGGCTGGGAGACTCCGCCGAGACGAAGACGGTCGCGTGGAGATTGACTGCGACGGTCAGGGGGTTCTCTTCGTGGAGGCCGACACCGGCGCAGTCATCGACGACTTCGGGGACTTTGCACCGACGCTTGAGCTCCGGCAGCTCATCCCCGCCGTGGATTATTCGCAAGGGATCGAAACCTATCCCCTGTTGGTGTTACAGGTAACACACTTCAAATGTGGAGGGGCATCACTAGGAGTTGGTATGCAGCATCATGTAGCAGATGGAGCTTCTGGTCTTCATTTCATCAATACATGGTCTGATGTGGCTCGTGGCTTGGATGTTTCGATTCCACCATTCATTGATAGAACAATACTTCGTGCTAGAGATCCACCTCGACCAGTTTTTGATCACATTGAATACAAGCCCCCACCAGCCATGAAAACTCAACCAGGCACAGAATCTGATACTGCAGCTGTCTCTATTTTCAAACTCACACGAGACCAGCTCTCCACGCTTAAAGCCAAATCCAAAGAAGATGGCAACACAATCAACTACAGCTCTTATGAGATGTTGGCTGGACACGTTTGGAGAAGTGTCTGCAAAGCAAGAGCACTTCCTGAAGATCAAGAGACCAAATTGTACATTGCAACTGACGGAAGATCAAGGCTTCAACCTTCTCCTCCACCGGGTTACTTTGGCAATGTCATATTCACAACCACACCCATAGCTCTGGCAGGTGATCTCATCTCAAAACCAACATGGTATGCTGCAAGCAGAATCCACAACGCATTACTACGAATGGACAACGAATATTTGAAATCCGCTCTTGACTATCTAGAGCTGCAACCTGATCTCAAAGCTCTGGTTCGTGGTGCACACACTTTCAAATGTCCAAATCTTGGCATCACCAGCTGGACTAGGCTTCCCATCCATGATGCTGACTTTGGTTGGGGAAGGCCCATATTCATGGGTCCTGGTGGAATTGCATTCGAGGGTTTATCTTTCATAATCCCAAACTCCACCAATGATGGTAGCTTATCTGTCGCAATATCTCTTCAGCCCGACCATATGAAGCTGTTTAAGGAATACTTTTATGACATTTGA 1368 0.5 MVVWVRWRVTIGGESGRVGAFWIREMIINVKESTMVRPAEEGDRRVVWNSNVDLVVPNFHTPSVYFYRANGASNFFEGKVLKEALSKVLVPFYPMAGRLRRDEDGRVEIDCDGQGVLFVEADTGAVIDDFGDFAPTLELRQLIPAVDYSQGIETYPLLVLQVTHFKCGGASLGVGMQHHVADGASGLHFINTWSDVARGLDVSIPPFIDRTILRARDPPRPVFDHIEYKPPPAMKTQPGTESDTAAVSIFKLTRDQLSTLKAKSKEDGNTINYSSYEMLAGHVWRSVCKARALPEDQETKLYIATDGRSRLQPSPPPGYFGNVIFTTTPIALAGDLISKPTWYAASRIHNALLRMDNEYLKSALDYLELQPDLKALVRGAHTFKCPNLGITSWTRLPIHDADFGWGRPIFMGPGGIAFEGLSFIIPNSTNDGSLSVAISLQPDHMKLFKEYFYDI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02705 455 FunFam Spermidine hydroxycinnamoyl transferase 26 228 - -
Vimu11g02705 455 Gene3D - 22 230 IPR023213 -
Vimu11g02705 455 Pfam Transferase family 28 454 - -
Vimu11g02705 455 Gene3D - 237 455 IPR023213 -
Vimu11g02705 455 FunFam Tryptamine hydroxycinnamoyl transferase 232 453 - -
Vimu11g02705 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 33 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02705 Vimu-Chr11 47536703 47538784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02705 26 455 Monolignol Biosynthesis Gene Families AT5G48930 76.092 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02705 K13065 - gmx:100820075 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00060 4 321842 323249 Vimu11g02705 11 47536703 47538784 PCT