Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02703 ATGCCTGAAATGAGTAGGAAAAAAGCAATGAATCTCATCACCATGTTAGGGAAAGGCAAGGATTTTGTGGAGACAGTGGAATTAGGAAGAGAAGCATTTTGTGGAGACAGAATAAGAAAAAGTGAGGTGCCATGTCCAAGCCGATTGAGAGACAGTGGAAAAAAGTGTCTGGTAAGTCGACGAAGTTTCATGAAAAGGAAGGAACAGTTTCTTCCACCATTCCTCTGTTCCTTTTATACCTCGCATTCTCAACGATTCTCTGCATTGCAATTTGCGAAGTCACTCAGAAAAACGATCACTCACTACACTCACAAAACCGTTTTCCATTCACTTTACTCTCTTATGGCTTCCAAGGTAGAAGGAAAGAGCATTGGCATTGACCTTGGCACCACCTACAGTTGCGTGGGCGTCTGGCAAAACGACCGCGTTGAGATCATAGCCAATGACCAGGGCAACAGAACCACACCATCCTACGTGGCATTCACCGACACTGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTTGCCATGAACCCGCAAAACACCGTGTTCGACGCCAAGCGCCTCATCGGGCGCAGGTTTTCGGACCCTTCAGTGCAGGCCGACATGAAGCACTGGCCCTTTAAGGTTGTCCCCGGTCCCGCCGAGAAGCCCATGATCGTGGTGAGCTACAGAGGCGAAGAGAAGCAGTTCGCGGCGGAGGAGATTTCATCGATGGTGTTGACGAAGATGAAGGAGATCGCGGAGGCTTACCTTGGACAGAGCGTGAAGAACGCCGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGAGGCAAGCGACGAAGGACGCTGGTGCCATTGCCGGGCTTAACGTGATGAGAATCATCAACGAGCCAACCGCTGCTGCCATTGCCTATGGATTAGACAAGAAGGGTTCGAGGAGTGGCGAAAAGAATGTGCTTATCTTCGACCTTGGTGGCGGAACATTCGATGTGTCGCTCCTCACCATTGAGGAAGGCATTTTCGAAGTCAAGGCCACTGCCGGAGACACTCATTTGGGAGGTGAAGATTTTGACAACAGGCTTGTGAACCACTTTGTGGCTGAGTTCAAGAGGAAACACAAGAAGGATATTAGCAGCAGTGCGAGAGCTCTAAGGAGATTAAGGACTGCGTGTGAGAGAGCTAAGAGGACCCTGTCATCGACATCTCAAACAACCATCGAGATTGACTCTCTCTACGAAGGTATTGACTTCTATTCCACCATCACCAGAGCCAGGTTTGAGGAACTCAACATGGACTTGTTCCGCAAGTGCATGGAACCTGTTGAGAAGTGTTTGAGGGACTCCAAGATCGACAAGAGTCACGTCCACGACGTTGTCCTTGTTGGTGGATCCACCAGGATTCCAAAAGTGCAACAACTGTTGCAGGATTTCTTCAACGGGAAGGAGCTTTGCAAAAGCATTAACCCCGACGAGGCTGTGGCATACGGTGCTGCAGTGCAGGCTGCTATTTTGAGCGGCGAAGGGAACGAGAAGGTCCAGGACTTGCTTCTTCTTGACGTTACTCCTCTCAGCCTCGGGATTGAAACAGCCGGGGGTGTGATGACAGTGTTGATTCCGAGGAACACGACGATTCCCACCAAGAAGGAGCAGATTTTCTCTACTTACGCTGATAATCAACCGGGAGTGCTCATACAGGTGTACGAAGGTGAGAGGGCAAGGACCAAAGACAACAACCTGTTGGGAAAGTTTGAACTCGCTGGCATCCCTCCGGCTCCCAGAGGAGTTCCTCAAATCAATGTGTGTTTTGACATTGACGCAAATGGGATTTTGAATGTTTCGGCTGAGGATAAGACTGCAGGGGTGAAGAACAAGATCACGATCACCAATGATAAGGGAAGGCTGAGCAAGGAGGATATTGAGAGAATGGTGCAGGAGGCTGAGAGATACAAGGCAGAGGATGAGGATGTGAAAAAGAAGGTAGAGGCCAAGAACTCGTTGGAGAACTATGCTTACAACATGAGGAATACTGTGAAGGATGAGAAGTTTGCAGGAAAACTGAACCCTGCCGATAAGCAGAAGATAGAGAAGGCCATTGATGAGACGATTGAATGGCTTGACGGGAACCAACTGGCTGAGGTGGAAGAATTTGAGGACAGATTAAAGGATTTGGAGGGACTGTGCAACCCAATTATCTCAAAGATGTATCAAGGGAGTGCTGCAGATGTGCCAATGGGAGGTGCAGATGACATTCCTAATGGTGCTGGCTATGCAAAATCATCAACTGCTGGTGCTGGTGCTGGACCTAAGATCGAAGAAGTTGACTGA 2313 0.4924 MPEMSRKKAMNLITMLGKGKDFVETVELGREAFCGDRIRKSEVPCPSRLRDSGKKCLVSRRSFMKRKEQFLPPFLCSFYTSHSQRFSALQFAKSLRKTITHYTHKTVFHSLYSLMASKVEGKSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQADMKHWPFKVVPGPAEKPMIVVSYRGEEKQFAAEEISSMVLTKMKEIAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGSRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISSSARALRRLRTACERAKRTLSSTSQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSHVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYADNQPGVLIQVYEGERARTKDNNLLGKFELAGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEDIERMVQEAERYKAEDEDVKKKVEAKNSLENYAYNMRNTVKDEKFAGKLNPADKQKIEKAIDETIEWLDGNQLAEVEEFEDRLKDLEGLCNPIISKMYQGSAADVPMGGADDIPNGAGYAKSSTAGAGAGPKIEEVD 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02703 770 PANTHER HEAT SHOCK PROTEIN 70KDA 124 697 IPR013126 GO:0005524|GO:0140662
Vimu11g02703 770 ProSitePatterns Heat shock hsp70 proteins family signature 2. 317 330 IPR018181 -
Vimu11g02703 770 MobiDBLite consensus disorder prediction 740 770 - -
Vimu11g02703 770 Gene3D - 659 733 IPR029048 -
Vimu11g02703 770 CDD HSPA1-2_6-8-like_NBD 123 501 - -
Vimu11g02703 770 Gene3D - 185 240 - -
Vimu11g02703 770 ProSitePatterns Heat shock hsp70 proteins family signature 3. 454 468 IPR018181 -
Vimu11g02703 770 FunFam Heat shock cognate 70 kDa protein 2 433 480 - -
Vimu11g02703 770 Gene3D - 124 498 - -
Vimu11g02703 770 Gene3D - 306 480 - -
Vimu11g02703 770 Gene3D Actin; Chain A, domain 4 349 432 - -
Vimu11g02703 770 FunFam Heat shock protein 70 124 310 - -
Vimu11g02703 770 SUPERFAMILY Actin-like ATPase domain 311 502 IPR043129 -
Vimu11g02703 770 FunFam Heat shock cognate 71 kDa protein 349 432 - -
Vimu11g02703 770 ProSitePatterns Heat shock hsp70 proteins family signature 1. 126 133 IPR018181 -
Vimu11g02703 770 FunFam Heat shock 70 kDa protein 311 377 - -
Vimu11g02703 770 FunFam Heat shock protein 70 660 733 - -
Vimu11g02703 770 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 657 734 IPR029048 -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 122 135 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 172 180 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 510 529 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 591 607 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 323 333 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 483 503 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 150 162 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 260 280 - -
Vimu11g02703 770 PRINTS 70kDa heat shock protein signature 451 467 - -
Vimu11g02703 770 FunFam heat shock 70 kDa protein-like 185 240 - -
Vimu11g02703 770 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 506 663 IPR029047 -
Vimu11g02703 770 Coils Coil 635 659 - -
Vimu11g02703 770 SUPERFAMILY Actin-like ATPase domain 122 305 IPR043129 -
Vimu11g02703 770 Pfam Hsp70 protein 124 732 IPR013126 GO:0005524|GO:0140662
Vimu11g02703 770 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 505 658 IPR029047 -
Vimu11g02703 770 FunFam Heat shock 70 kDa 505 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02703 Vimu-Chr11 47531136 47535123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02703 115 770 Calmodulin-binding Proteins AT1G16030 85.366 0.0 1168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02703 K03283 - pvy:116132160 1184.09