Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02700 ATGAGGCCGATGCAACTCCCACCGCCTTCTGCCTCCGGCTCCGCCTCCGCTCCGCCGCCTACCAACAACAAGGATCACCGTCCCCAGCGGCGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGTGACACGAATTTGGCGGTGCCGCTTCCTCTTCCGCCATCCACGGCTCCGCCCGCGGCCAGCGGAGGAGCCAGCCAGCAACAGCAGCCGCAGCAGCAGGTGATCCCGTTTTCGGAGCTGGAAAGACTTAACCGCATCGGGAGCGGGAGCGGGGGGACTGTGTACAAGGTTGTGCACCGAACTAGCAGGCGCGTGTACGCGCTGAAGGTGATATACGGGCACCACGAGGAGTCCGTGAGGCGGCAGATCCACCGGGAAATCCAGATCCTGCGGGACGTGGACGATGCGAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTTCTGGAGTTCATGGACGGGGGATCTCTGGAGGGGAAACACATCCCGCACGAGCAGCAGCTGGCAGATCTGTCCAGGCAGATTCTTCGGGGGCTGGCGTACCTTCACCGGCGGCACATCGTGCACAGGGACATCAAGCCCTCGAATCTGCTGATAAACTCGCGGAAGCAGGTGAAGATCGCAGACTTCGGGGTGGGTCGGATTCTGAACCAGACCATGGATCCGTGCAATTCGTCGGTGGGGACCATCGCCTACATGAGTCCGGAGAGGATCAACACGGACATAAACGACGGGCAATACGACGCTTACGCGGGGGACATATGGAGCTTTGGGGTTAGCATATTGGAGTTCTACATGGGCAGATTTCCCTTCGCGGTTGGGAGGCAGGGCGATTGGGCCAGCCTCATGTGCGCTATCTGTATGTCTCAGCCACCCGAGGCTCCTCCCTCTGCCTCCCTCCACTTCAGGGATTTCATCTCTAGGTGCCTCCAGCGGGATCCCTCTCGCCGATGGTCTGCCTCAAGGTTGCTGGAACATCCTTTCATTGCTCCTCCCCACTCCAACCACAATCAGCTTCCTCCCAATCTCCACCAGCTCCTACCCCCTCCTCCTCCCAGGCCTCTTCCCTCCTAG 1095 0.6073 MRPMQLPPPSASGSASAPPPTNNKDHRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPPAASGGASQQQQPQQQVIPFSELERLNRIGSGSGGTVYKVVHRTSRRVYALKVIYGHHEESVRRQIHREIQILRDVDDANVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPHEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASLHFRDFISRCLQRDPSRRWSASRLLEHPFIAPPHSNHNQLPPNLHQLLPPPPPRPLPS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02700 364 Gene3D Transferase(Phosphotransferase) domain 1 163 348 - -
Vimu11g02700 364 FunFam Mitogen-activated protein kinase 2 62 160 - -
Vimu11g02700 364 CDD PKc_MAPKK_plant_like 79 336 - -
Vimu11g02700 364 MobiDBLite consensus disorder prediction 1 73 - -
Vimu11g02700 364 ProSiteProfiles Protein kinase domain profile. 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02700 364 MobiDBLite consensus disorder prediction 24 38 - -
Vimu11g02700 364 Pfam Protein kinase domain 82 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02700 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vimu11g02700 364 FunFam Mitogen-activated protein kinase 2 161 347 - -
Vimu11g02700 364 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Vimu11g02700 364 Gene3D Phosphorylase Kinase; domain 1 61 160 - -
Vimu11g02700 364 SUPERFAMILY Protein kinase-like (PK-like) 78 357 IPR011009 -
Vimu11g02700 364 SMART serkin_6 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02700 364 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 30 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02700 Vimu-Chr11 47521759 47526229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02700 1 352 MAP Kinase Kinase Gene Family AT1G51660 68.421 9.14e-169 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vimu11g02700 Pkinase 8.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02700 K13413 - gmx:100818488 581.252