Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02698 ATGAAGGAGAAGGGCAAAGAGAAGGAGACAGAGAAGAAGAAGTATCCGATCGGAGCTGAACATTACCTTCTCTACGAAGAGATTGGTCAGGGAGTCAGCGCTTCTGTTCACCGCGCGCTCTGCGTTCCTTTCAACGAGGTCGTCGCCATCAAAATTCTCGACTTCGAACGTGACAATTGCGATCTGAACAACGTGTCTCGCGAGGCGCAGACAATGATCCTCGTGGACCACCCTAACGTGCTCAAATCACACTGCTCCTTCGTCAACGAGCACAATCTGTGGGTGGTCATGCCGTATATGGCCGGCGGCTCGTGCCTCCACATACTCAAAGCCGCTCACCCCGACGGGTTTGAGGAGGTTGTGATTGCGACCGTTCTCAAAGAGGTGCTGAAGGGTTTGGAGTACCTTCACCATCACGGCCACATCCACCGCGACGTCAAGGCTGGCAACATTCTCATCGATTCACGCGGCGCCGTCAAGCTTGGCGACTTTGGTGTTTCCGCTTGCCTTTTTGATTCTGGTGACCGCCAACGCACCAGGAATACATTTGTTGGAACTCCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTCCATGGCTACAACTTCAAAGCTGACATCTGGTCATTTGGTATTACCGCCTTGGAGCTTGCTCATGGTCATGCTCCTTTCTCAAAGTATCCACCAATGAAGGTACTGCTCATGACTTTGCAAAACGCACCCCCTGGCCTTGACTACGAAAGGGATAAGAAGTTCTCTAAGTCGTTTAAGCAGATGATTGCTAGCTGCTTGGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTAAAGCATTCCTTCTTTAAGCAGGCTCGCTCCAATGATCATATTCGAAGGCTCTTGGAGGGGCTGCCTGCTTTAGGTGATCGAATGGAGGCCCTAAAGAGAAAAGAAGAAGATATGCTCGCACAAAAGAAAATGCCTGATGGTAAGATGGAGGAATTATCACAGAATGAATACAAACGAGGAATTAGTGGCTGGAACTTCAATCTTGAAGATATGAAGGCTCAGGCTTCCTTGATCCATGATTTCGACGATGCTATTACCGATATGAATCATGCAGCAAGTTCAAGTTCTTTAGCTACACTTGATTCACAAGAGAAACCATTACCGAGTGCATTTCACAACCCTTCTCGATCTGTTGATATGCAATTTCTTAAACGGAGTAGTTCTAATGCCTTTGGTTCACAGGAAGAAAATGATGAGATGCGAAATCAAGCAGCTTCTGTTTCTGCAATTGATGCCAAAACTAGGCTTGAAAAATCCGACGATGACTCTTGCATCACCAGTTCGAGCCATGAACCACAAATTAAGTCATCCTCTATCGATAATCACGTGGACCATAATTTGGGTGAGAAATCTGACATGGAAAACGGTGGAAAATTGGTGGACGGGATGTCCACCCATCATCATCATAGAAGAGGATGTTCATCGAGCATCTTACCAGAAGTTGTCTTTCCACCAATTCGACCAGAAAGGTTTGATCATCCTAAATCCCAATATACGGGCTTTCTTCTGCATTCCATCCTCTGGGATCTCAGTGAGAAACCGCAAAATCTGGTCCAGAACGGTTCAAGTTGCAATGCAACTTCAGTTCCACAGACAGGAGAGGACGTACTTACTGAACTTCCATCAAAAGTCTCAAAATCATCAGCTAATTCTGATGACCCTGATGAGAAATCGAAAGTGCCAGTTGTACAGCAGAGAGGACGTTTTAAGGTTACATCTGAAAATGTTGACCCAGAAAAGGTGGGCCCTTCTCCTGTACTGCAAAAGAGTCATAGCATGCAGGTTTTTAGCCAGCATAATGTTGCTTCTGTACAACAACCAACTTTGCCATTATTACCAGCATATGAAGCCACATCATCAAATCTTTCGGGTCACGCCGTGTTTCCCATATTGCACTCTGTACTGCAGACAAATATTCTTCAACAGGAAAGCATTTTATGTTTAATGAGGCTTATTACTGCCGGTGACTCTACAGCTGATGGCTCATGTACCCTAGCTCAAATAGCAGGAACTGAAAAATCTTTGCTTGAAGCTGCTCAGGAGAGGGAGAAGGAGTTACTTAGTGAGATAACTGATTTGCAATGGAGGCTTATCTGTGCTCAGGAGGAGCTTCAAAAATTGAAAACAGAAAACGCCCAGTATGGAATGGATGGAGGCGGGATTAAACTTTAA 2226 0.4587 MKEKGKEKETEKKKYPIGAEHYLLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVNEHNLWVVMPYMAGGSCLHILKAAHPDGFEEVVIATVLKEVLKGLEYLHHHGHIHRDVKAGNILIDSRGAVKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDHIRRLLEGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLEDMKAQASLIHDFDDAITDMNHAASSSSLATLDSQEKPLPSAFHNPSRSVDMQFLKRSSSNAFGSQEENDEMRNQAASVSAIDAKTRLEKSDDDSCITSSSHEPQIKSSSIDNHVDHNLGEKSDMENGGKLVDGMSTHHHHRRGCSSSILPEVVFPPIRPERFDHPKSQYTGFLLHSILWDLSEKPQNLVQNGSSCNATSVPQTGEDVLTELPSKVSKSSANSDDPDEKSKVPVVQQRGRFKVTSENVDPEKVGPSPVLQKSHSMQVFSQHNVASVQQPTLPLLPAYEATSSNLSGHAVFPILHSVLQTNILQQESILCLMRLITAGDSTADGSCTLAQIAGTEKSLLEAAQEREKELLSEITDLQWRLICAQEELQKLKTENAQYGMDGGGIKL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02698 741 FunFam Serine/threonine-protein kinase BLUS1 11 99 - -
Vimu11g02698 741 Coils Coil 694 728 - -
Vimu11g02698 741 Gene3D Phosphorylase Kinase; domain 1 10 98 - -
Vimu11g02698 741 MobiDBLite consensus disorder prediction 537 581 - -
Vimu11g02698 741 SMART serkin_6 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02698 741 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vimu11g02698 741 MobiDBLite consensus disorder prediction 427 472 - -
Vimu11g02698 741 Pfam Protein kinase domain 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02698 741 MobiDBLite consensus disorder prediction 537 553 - -
Vimu11g02698 741 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Vimu11g02698 741 FunFam serine/threonine-protein kinase BLUS1 isoform X1 103 335 - -
Vimu11g02698 741 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 727 IPR047173 GO:0043539
Vimu11g02698 741 Gene3D Transferase(Phosphotransferase) domain 1 103 335 - -
Vimu11g02698 741 MobiDBLite consensus disorder prediction 374 394 - -
Vimu11g02698 741 MobiDBLite consensus disorder prediction 567 581 - -
Vimu11g02698 741 CDD STKc_OSR1_SPAK 20 283 - -
Vimu11g02698 741 ProSiteProfiles Protein kinase domain profile. 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02698 741 MobiDBLite consensus disorder prediction 444 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02698 Vimu-Chr11 47507877 47515037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02698 11 714 MAP Kinase Kinase Kinase Kinase AT1G79640 61.732 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vimu11g02698 Pkinase 1.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02698 K08835 - gmx:100780339 1182.93