Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02689 ATGGAAACAGATGGCATGGCTGGGGCTGCTATGTATGAACTGGTGCGTGTTGGTCGTGATAATCTCATTGGAGAAATCATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGGTGCAATTATGAAACTGCATACTTCGTTGAAGATGCCGCATTTTCTTCTTTTTATCGATATGTTGCCTTTTGTCATTTATGAGGAAACTGCTGGTTTGATGGTTAATGATCCAGTGTTACGGACACACAAGCCCTTGTCCGTGGAGTTGGGGCCTGGAATATTGGGGAATATTTTTGATGGAATTCAGAGGCCTTTGAAAACTATTGCTAAAAGATCTGGCGATGTCTATATTCCTCGGGGTGTGTCTGTTCCAGCACTTGACAAAGATACACTTTGGGAATTTCAGCCTAAGAAAATTGGTGAAGGTGACCTATTAACTGGTGGAGATTTATATGCTACTGTTTTTGAGAACACTCTAATGCAACACCATATTGCACTGCCTCCTGATGCCATGGGAAAGATTACCTACATTGCACCCCCTGGCCAATATTCTATAACGGATACTGTATTGGAACTTGAGTTTCAAGGTGTCAAGAAGAAATTCACCATGCTTCAGACCTGGCCTGTACGTACCCCAAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAGCGTGTTCTTGATGCCCTTTTCCCCTCAGTTCTTGGTGGGACTTGTGCCATACCTGGAGCTTTTGGCTGTGGGAAAACAGTCATCAGTCAGGCTCTTTCTAAGTATTCCAATTCTGATGCTGTTGTTTACGTTGGTTGTGGGGAACGTGGAAATGAAATGGCAGAGGTCCTCATGGATTTTCCCCAACTTACAATGACATTACCTGATGGTCGGGAAGAATCTGTCATGAAGCGTACAACACTGGTGGCTAACACTTCAAACATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACATTAGCTGAGTATTTTAGAGATATGGGTTACAATGTCAGTATGATGGCTGATTCTACATCTAGGTGGGCAGAAGCATTGCGTGAAATCTCTGGACGACTGGCAGAGATGCCTGCAGATAGTGGATATCCTGCTTATCTTGCTGCTCGTTTAGCCTCTTTCTATGAACGTGCTGGGAAAGTAAAATGTCTTGGAGGCCCTGAACGTACCGGTAGTGTAACAATTGTTGGTGCTGTTTCACCACCTGGAGGTGACTTCTCAGATCCTGTGACATCTGCAACTCTCAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAGCACTTTCCTTCGGTGAACTGGCTTATTTCTTATTCAAAATACTCTACGGTATGTCCTGAAGTTGGTTACTTAGTAACTCATTCTCCTGCTGCGCTCGAGTCCTTTTACGAACAATTTGATCCAGATTTTATAAACATTAGGACTAAAGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTGGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCCTTTACACCATATGACAAATTCTGTCCCTTCTACAAGTCTGTTTGGATGATGCGTAACATTATCCATTTCTACAATTTGGCCAATCAGGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATAACTTACTCCCTCATTAAGCATCGTGTGGGAGATCTCTTCTACCGATTAGTGTCTCAGAAATTTGAGGATCCGGCAGAAGGTGAAGCTGCATTGATCGCCAAATTTCAGAAGTTACACGAGGACCTATCTACTGGCTTCCGCAACCTTGAGGATGAAACCCGATGA 1896 0.4399 METDGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQGAIMKLHTSLKMPHFLLFIDMLPFVIYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENTLMQHHIALPPDAMGKITYIAPPGQYSITDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTVCPEVGYLVTHSPAALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGSDGQKITYSLIKHRVGDLFYRLVSQKFEDPAEGEAALIAKFQKLHEDLSTGFRNLEDETR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02689 631 FunFam V-type proton ATPase catalytic subunit A 183 451 - -
Vimu11g02689 631 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 479 561 - -
Vimu11g02689 631 Gene3D - 85 451 IPR027417 -
Vimu11g02689 631 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 226 452 IPR000194 GO:0005524
Vimu11g02689 631 CDD V_A-ATPase_A 82 454 - -
Vimu11g02689 631 Gene3D - 128 199 - -
Vimu11g02689 631 NCBIfam V-type ATPase subunit A 60 619 IPR005725 GO:0016887|GO:0033180|GO:0046961|GO:1902600
Vimu11g02689 631 Gene3D - 1 38 IPR023366 -
Vimu11g02689 631 CDD ATP-synt_V_A-type_alpha_C 483 589 - -
Vimu11g02689 631 Gene3D - 470 630 IPR024034 -
Vimu11g02689 631 FunFam V-type proton ATPase catalytic subunit A 468 620 - -
Vimu11g02689 631 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 4 38 IPR022878 GO:0046034|GO:0046961
Vimu11g02689 631 Pfam ATPsynthase alpha/beta subunit N-term extension 96 217 IPR031686 -
Vimu11g02689 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 455 IPR027417 -
Vimu11g02689 631 Hamap V-type ATP synthase alpha chain [atpA]. 14 630 IPR022878 GO:0046034|GO:0046961
Vimu11g02689 631 ProSitePatterns ATP synthase alpha and beta subunits signature. 443 452 IPR020003 GO:0005524
Vimu11g02689 631 FunFam V-type proton ATPase catalytic subunit A 128 199 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02689 4 631 Primary Pumps ATPases(2) AT1G78900 87.580 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02689 K02145 - gmx:100775727 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02689 11 47468257 47472610 Vimu11g02689 11 47468257 47472610 ECH