Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02677 ATGTGGCTTCCAGGTGCAAGGGAATCAATAATTCAAGGTAGAGGAAAAGGAAATGGATTGGTGGCAGTTGCTGTAGAAAAAGATAAAAAAGGGAGCAGACAGGCTCTCAAATGGGCTGCTGACACGCTTCTTTCCAGAGGCCAAACTCTTGTTCTCATCCACGTCTTGCACACAACCTCCTCACCTTTTACCAGAGGCATACGCAGCACCAACTGGCCAGTTACATCTCCCAAAAAAGACAAACTTGTCAACATTACAAAGGATCTATTTGAAACCTTTCATTGTTATTGTTCACGCAAAGATATACACTGTCTTGATGTCGTTCTCCAAGACATAGATGTGGTGAAAGGAATAACTGAATATGTCTATTATGCTGCAATTGAGAACTTGGTGGTTGGTGCAGCCTCTAGGCATGGCTTTATTAGATTCAAGACAAGTACACCAAGCAGCATATTAAAGGGAGCCCCGGATTTCTGTAGTGTGTATGTCATTTCTAAGGGGAGAATATCTTCAGTTAGGAGTGCTGCTCGAAGGGCCCCACATGCCTCCCCACTGCAGAGGCAAATAGAGACTCTAAATGATGAGAATGGAAGTGAAAACGATACACCCTGTAGGCGGTTGAGCTTCAAAAGCAACAGGGTATCATCCAAAACCATAGGCTTGCAAAGTGAATCCATGAACAAGATACAATCAGGCAGAAGATCAGGGACGATTGGAAGGTTATCCATGGATTTCGCCGAACATGACTCTGACATATCATTTGTAAGCTCTGACAGGCCCAGCAGTGTGCGTTCATCCTCTGTTTTCTACGACCATGTTGAATGTGCCAGAAATAGCCGAACTTCAACCAGTTCAGACCGTGGCTGGGGGTCAACATACATGAAACCGAAGTTCACCGAGCCCTGTTCACCGGACCATTTAATTTCAGACGAAAGTAGCCGCTCATCGCTTTCCAGTTTGCAAAACAATGACGAAGTGGAAGCTGATGTGAGGAGGTTGAGGCTGGAGTTAAAGCAAACAATGGAAATGTACAGTAATGCATGCAAAGAGGCCCTAACAGCGCAGCAGAAGTTACTGGAACTGAACAACTGGAGAGTTGAGGAAGAAAAGAAACTCGAGGATGCACGGGTAAACCAGGAAGCAGCAGAGGCAATTGCAGAGAAAGAGAAAGAAAAAAGTAAAGCAGCTAAGGAAACAGCAGAAATGGCAACAAGACTTGCAAGGCTGGAAACAAAGAGAAGAGCAAACGTGGAAGGGAAATATCTGAAAGAAGCAGAGGAAATGAGGAAAGCGTTGAAAAATCTACATGAGACAGATAAAAGATACAGGAGATACACATTGGAGGAGATTGAAAAGGCAACAAACGAGTTTTCTGAAGCACTAAAAATAGGGGAAGGGGGATATGGTCCAGTGTACAAGTGTTACCTCGATCACACAGCAGTGGCAGTGAAGATTCTGCGAGCAGGATCAGCACAGGGGGAAACACAATTTCAGCAAGAATTGAACATACTAGGGGCCATAAGACATCCCAACATGGTGCTTCTGGTAGGAGCATGTCCGGAAGAGGGAGTGCTGATATACGAATACATGGAGAATGGAAGCTTGGAAGACTGTCTGTTCGGAGAAAAGAAGGAGGAGATGATGAGTTGGGAGCTGAGGTTTGGAATAGCGGCGGAGATAGCGACGGGGCTGCTGTTTTTGCATCAGACAAAACCAGAACCGTTGGTTCACCGAGATCTGAAGCCCGCAAATATATTGCTGGATCACAACTATGTGAGCAAGATAAGCGATGTGGGACTGGCCAGGCTTCTGCCAGCTGCAGTGGCGGAGAACGAGACGCAGTGCCGCATGACTGCCGCAGCAGGAACTTTCTGCTACATCGATCCCGAGTACCAGCAGACCGGAATGCTGGGAGTTAAGTCGGATGTGTATTCACTGGGAATCATTATTCTTCAGCTATTGACGGGAAGGCCTGCCATGGGCCTGGCCCACCAGGTCCAACAATCCATCCAGAACGAGACCTTTGCCCAGATTCTGGACCCATCTGTCCCTGACTGGCCCCTCACAGAGGCCCTCTCCCTTGCCAACTTGGCACTCCAGTGCGCGCAGCTCAGCCGGAAGGACCGCCCTGACCTTGGCACCGTCCTTCTCCCTCAGCTCCAAATTCTCAGAGACTTTGCCCGCCACCACCATGAACAAACTCCCCAGGAACAGGAAGTCCTCAGCGAACCCACTTCTCAACACTCCGGAAGCCCACCCACCCCTTCCCCCTCGTCAACCCCACCAGCAGACTATGTATATGAAATTTAA 2310 0.4797 MWLPGARESIIQGRGKGNGLVAVAVEKDKKGSRQALKWAADTLLSRGQTLVLIHVLHTTSSPFTRGIRSTNWPVTSPKKDKLVNITKDLFETFHCYCSRKDIHCLDVVLQDIDVVKGITEYVYYAAIENLVVGAASRHGFIRFKTSTPSSILKGAPDFCSVYVISKGRISSVRSAARRAPHASPLQRQIETLNDENGSENDTPCRRLSFKSNRVSSKTIGLQSESMNKIQSGRRSGTIGRLSMDFAEHDSDISFVSSDRPSSVRSSSVFYDHVECARNSRTSTSSDRGWGSTYMKPKFTEPCSPDHLISDESSRSSLSSLQNNDEVEADVRRLRLELKQTMEMYSNACKEALTAQQKLLELNNWRVEEEKKLEDARVNQEAAEAIAEKEKEKSKAAKETAEMATRLARLETKRRANVEGKYLKEAEEMRKALKNLHETDKRYRRYTLEEIEKATNEFSEALKIGEGGYGPVYKCYLDHTAVAVKILRAGSAQGETQFQQELNILGAIRHPNMVLLVGACPEEGVLIYEYMENGSLEDCLFGEKKEEMMSWELRFGIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLLPAAVAENETQCRMTAAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIILQLLTGRPAMGLAHQVQQSIQNETFAQILDPSVPDWPLTEALSLANLALQCAQLSRKDRPDLGTVLLPQLQILRDFARHHHEQTPQEQEVLSEPTSQHSGSPPTPSPSSTPPADYVYEI 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02677 769 FunFam Os07g0541700 protein 530 623 - -
Vimu11g02677 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Vimu11g02677 769 SMART serkin_6 457 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02677 769 SUPERFAMILY Protein kinase-like (PK-like) 439 716 IPR011009 -
Vimu11g02677 769 Gene3D HUPs 20 164 IPR014729 -
Vimu11g02677 769 Pfam Universal stress protein family 23 162 IPR006016 -
Vimu11g02677 769 Gene3D Transferase(Phosphotransferase) domain 1 530 747 - -
Vimu11g02677 769 Coils Coil 323 343 - -
Vimu11g02677 769 PANTHER OS02G0152300 PROTEIN 21 748 - -
Vimu11g02677 769 Pfam Protein kinase domain 460 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02677 769 Gene3D Phosphorylase Kinase; domain 1 426 529 - -
Vimu11g02677 769 MobiDBLite consensus disorder prediction 730 769 - -
Vimu11g02677 769 ProSiteProfiles Protein kinase domain profile. 457 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02677 769 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 429 529 - -
Vimu11g02677 769 Coils Coil 365 401 - -
Vimu11g02677 769 MobiDBLite consensus disorder prediction 306 324 - -
Vimu11g02677 769 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 164 - -
Vimu11g02677 769 CDD STK_N 20 167 - -
Vimu11g02677 769 MobiDBLite consensus disorder prediction 300 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02677 Vimu-Chr11 47348578 47351612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02677 1 759 Receptor kinase-like Gene Family AT1G78940 53.393 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu11g02677 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02677 - - gmx:100818471 958.362