Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02674 ATGCACCACAACCTTAACCTTGCAAGGTTGTGGCTTGCTTTGCTTGCGGTCTCAACCACCTCAGTTCATTGCAAAACCTCCTCCCAAGATGTCTCAGCCCTTAATGTGATGTATTCCAGCTTAAATTCCCCTTCAAAGCTGAGTGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGTGACTCCTGGGAAGGAATAAAATGTTCAGGCTCTTCTAAATTTGTCAGACATGGGACTTACTGGATCAATGGGCTACCAGTTGGCAAGCTTATCATCAGTAACCTACTTTACAGTGATTTGAGCAGCAACAACCTCAAGGGTGATATACCGTATCAACTTCCTCCAAAAGCTCGCCATATAGATCTTTCAAATAATGGTTTCGGGGGAAGTATACCTTATTCATTTTCTCAGATGAATGACCTCACAAACCTGAGACCTGCCGCAGAGTCTCAAATCGCTCAAAAGCCTCAAGAAGTTGTAAGAATGCCCTCAGTATCACTGTCAAGGAACAATACACACATATTCACTGCTAACATCTTTTTGTCCTTATACAGGCACCTTCAAAACAACAAATTCACTGGTTCAGTAAATGTTCTTGCCAAACTTCCACTTGATGATTTAACTGGAGGAAACTCATGGTCAAAGGGACAAGCACCTCCTCCTCCTCCTGGTACTCCCCCCATCAACCAATCCAAGAAAAAGAAAGATAAATCCGTTATTAGTGGAGTAGCTATAGCAGGCATAGTTTTTGGCATACTGGCAGTAATTATAATTGTTATTGCTCTTTCTAAAAGAAAGTCATCGAAACCTTCTTCACACTTTAGCGATGAAGAGAGGAGTAGCCACCGTACACCCTTTGCATCTCGGGAGTTATCAAAAGATTCGGGTGCTAACCTCAGCAAAGGATCCAAAGGATTTAACTCGTTGGATTCTACTTCCATTGACGTAAAGACTTTGCAAAAATCTCCGTCAATTGTCAGGTCGTCTGTCTCCGATTGTGTGCAATCCTTTAATGACAACGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGTACATCAATCCGTGTTACTACTTTTTCACTGGCAGAGTTGTACTCGGCTACTGCTAATTTCGCTTCAGCTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGGGCTAAATATTCTGATGGAAAGGTATTGGCTGTAAAAAAAATCAACCCTTCGCTTCTCTCTGGTCACTCCGAGGAATTCTCGCAGATTGTTTCAAGACTCAGCAAACTTCACCACCCAAATATTGTTGATCTTGTTGGTTATTGTTCGGAAAAGGAGCATATGCTAATATATGATTATTTTAGAAACGGCTCTCTCCATGGCTATTTACACTTATCAGACGACTTCAGCAATCCACTCACTTGGAACACAAGAATCAGAATTGCATTGGGAACAGCTCGGGCTATTGAGTACCTGCATGATGTTTGTTCTCCTCCTTTATTGCACAAGAATATTAAGACCTCGAATATTTTGCTTGACAATGATCTGAATCCTCGTCTCTCAGACCATGGTTTGGCATCCTTTCACCAGCGTACTAGCCAAAATCTTGGGACGGGATATAATGCACCGGAATGCACAAAGCCTTCAGCTTTTACACAGAAGAGTGATGTATACAGTTTTGGGGTAGTGATGCTGGAACTTCTGACAGGTCGAATGGCTTTCGACAGTTCAAGGCCAAAGGCAGAACAATGTCTGGTTCGTTGGGCAACCCCACTTCTTCACGACATTGACGCGGTGGAGAAAATGGTGGACCCTGCCTTGCGGGGGCTTTACCCTCCTAAGTCACTCTTCCGATTTGCAGATATCATTGCTCTCTCTGTTCAGTCTGAGCCTGAATTTCGGCCACGTGTGTCAGAGTTAGTTCAGGCTTTAATGCGATTGGTTCAAAGTTCAAGTCTGACAATGAGGGAGGATTTTGAGTGA 1959 0.4319 MHHNLNLARLWLALLAVSTTSVHCKTSSQDVSALNVMYSSLNSPSKLSGWKSSGGDPCGDSWEGIKCSGSSKFVRHGTYWINGLPVGKLIISNLLYSDLSSNNLKGDIPYQLPPKARHIDLSNNGFGGSIPYSFSQMNDLTNLRPAAESQIAQKPQEVVRMPSVSLSRNNTHIFTANIFLSLYRHLQNNKFTGSVNVLAKLPLDDLTGGNSWSKGQAPPPPPGTPPINQSKKKKDKSVISGVAIAGIVFGILAVIIIVIALSKRKSSKPSSHFSDEERSSHRTPFASRELSKDSGANLSKGSKGFNSLDSTSIDVKTLQKSPSIVRSSVSDCVQSFNDNEFANRLNARRSTSIRVTTFSLAELYSATANFASARLLGEGSIGCVYRAKYSDGKVLAVKKINPSLLSGHSEEFSQIVSRLSKLHHPNIVDLVGYCSEKEHMLIYDYFRNGSLHGYLHLSDDFSNPLTWNTRIRIALGTARAIEYLHDVCSPPLLHKNIKTSNILLDNDLNPRLSDHGLASFHQRTSQNLGTGYNAPECTKPSAFTQKSDVYSFGVVMLELLTGRMAFDSSRPKAEQCLVRWATPLLHDIDAVEKMVDPALRGLYPPKSLFRFADIIALSVQSEPEFRPRVSELVQALMRLVQSSSLTMREDFE 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02674 652 SUPERFAMILY Protein kinase-like (PK-like) 350 636 IPR011009 -
Vimu11g02674 652 SUPERFAMILY L domain-like 25 194 - -
Vimu11g02674 652 Gene3D Ribonuclease Inhibitor 24 207 IPR032675 -
Vimu11g02674 652 Pfam Protein tyrosine and serine/threonine kinase 374 636 IPR001245 GO:0004672|GO:0006468
Vimu11g02674 652 MobiDBLite consensus disorder prediction 268 288 - -
Vimu11g02674 652 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 335 445 - -
Vimu11g02674 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 446 650 - -
Vimu11g02674 652 ProSiteProfiles Protein kinase domain profile. 370 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02674 652 MobiDBLite consensus disorder prediction 209 233 - -
Vimu11g02674 652 PANTHER OS01G0253100 PROTEIN 279 642 - -
Vimu11g02674 652 Gene3D Transferase(Phosphotransferase) domain 1 446 651 - -
Vimu11g02674 652 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vimu11g02674 652 MobiDBLite consensus disorder prediction 267 303 - -
Vimu11g02674 652 Gene3D Phosphorylase Kinase; domain 1 330 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02674 Vimu-Chr11 47331217 47335292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02674 7 651 Strubbelig Receptor Gene Family AT1G78980 52.685 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu11g02674 PK_Tyr_Ser-Thr 3.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02674 - - pvu:PHAVU_010G165200g 862.448