Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02651 ATGGAGGAAGATGAAATGGTTTGGTGTTCGTCTGATTCTTGTTCTTCTGATTCGGGAGAGGAAGATATCGAAGAACGGAAATCTGATTTTTATTCTTCTGATTCGGGAGAGGAAGATAACGAAGAACGGAAATCGCAGAACGTGGATGCAGACAGTCGCTGCTTACCGCGGCTTCTTTCAGTATCGCAAGAGGCGGCCGTGTGTAGAAAACCCTTTAAACCTCCATCCTCCAAAACTCATGCTTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCTGCCATCTCCGACTTCCAATTCAACGTATCGGTAACTGATGTTGATGTTCCTGTTTCTGAGGAGCCGAAACCATCTCTGTCCCCGGGGATCGACCCTTTAGTACTGTGGCACCCTCAAGACTTCCACGATGACCCCTCTAATACTAATTTTACCACCATTACAGTTGATCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTGTCAAGGGTTTGGTGGCAAGCCATTGGTTCGAAAATCTATCATAGTGACTCCCACCAGCCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGTGTTCGTCTTGTCGCTCTATGTGAGAGTTCAAGAGAAGATGTTGTCTCTGCGATTGACAGTTTTACAAATCCTGAAAGAAATTTACAGGTTCTCATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCTCTTCCCTGCAAACGAAGAATTTTATTGTCGGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCGTGGAATATTGGGCAGTGTTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCGGCCACTGTTGAAGAGAAGAAGATAGGTGCTGAACGCTCTGCTGAATTAAGTGTCAATGCTGCCTCTATTACTTCAGGTAAATCTGGAACCGAGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGTCACCTAAGATAGTTGAAGCTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCCATATAAACATTTTATACAATCGAAAAATGTGAAGAGGGCAATTACTGATAAACTGAAGCAATCAAAGATTTTGGCCTGCATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGGTATGA 1461 0.423 MEEDEMVWCSSDSCSSDSGEEDIEERKSDFYSSDSGEEDNEERKSQNVDADSRCLPRLLSVSQEAAVCRKPFKPPSSKTHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAISDFQFNVSVTDVDVPVSEEPKPSLSPGIDPLVLWHPQDFHDDPSNTNFTTITVDPLLVRYLRPHQREGVQFMFDLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFGGKPLVRKSIIVTPTSLVSNWEAEIKKWVGESVRLVALCESSREDVVSAIDSFTNPERNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNRGILGSVAHFRRYYEAPIICGREPAATVEEKKIGAERSAELSVNAASITSGKSGTEFILRRTNALLSNHLSPKIVEAVCCKLTPLQSDPYKHFIQSKNVKRAITDKLKQSKILACITALKKLCNHPKV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02651 486 Gene3D - 419 440 IPR027417 -
Vimu11g02651 486 Pfam SNF2-related domain 188 485 IPR000330 GO:0005524|GO:0140658
Vimu11g02651 486 PANTHER SNF2/RAD54 FAMILY MEMBER 47 485 - -
Vimu11g02651 486 SMART ultradead3 169 372 IPR014001 -
Vimu11g02651 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 486 IPR027417 -
Vimu11g02651 486 MobiDBLite consensus disorder prediction 1 52 - -
Vimu11g02651 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 400 IPR027417 -
Vimu11g02651 486 MobiDBLite consensus disorder prediction 20 50 - -
Vimu11g02651 486 Gene3D - 441 485 - -
Vimu11g02651 486 Gene3D - 146 407 IPR038718 -
Vimu11g02651 486 FunFam DNA repair and recombination protein RAD54 142 408 - -
Vimu11g02651 486 CDD DEXHc_RAD54 173 419 - -
Vimu11g02651 486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 360 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02651 Vimu-Chr11 47171468 47174798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02651 158 484 RAD5 or RAD16-like Gene Family AT5G22750 24.318 6.50e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu11g02651 SNF2_N 5.4e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02651 K10875 - gmx:100781631 720.694