Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02602 ATGGTGATGAGTTCATTTTCTGTGAAATGGTCATCCCTGTGGTTGAACGCCACCAACTTGCATCCAATTCTAACCCTTCTGCTCACTCTCATCACTGTGCTATGGTTGCTACGGTGGTTCAGGAATTCAACCAATGAAGCATCTCCTTTGCCTCCAGGTCCTACAGGTCTTCCATTTCTTGGCTACCTTCCCTTTCTAGGAACCCATCCCCACCTCAAATTTCACAAGCTGGCACAACTTTATGGACCCATCTACAAGCTCACGTTGGGAACCAAAACGGTGGTGGTGGTTAGTTCACCCTCTCTGGTGAAAGAGATAGTGCGTGATCAAGACACCATATTTGCCAACAGGGAGCCTCTAATTGCTGCATTGGTCGCCTTGTACGGTGGCACTGACATAGCCTCTTTGCCTCACGGTCCACAGTGGAGGAAGGCTCGCAAGATATTGGTACGTGAGATGCTCAGCAGCACCAACCTCACTAACTCTTTTCCTCATAGGAGAGTGGAGGTTAAGAAATCCATCAGGTATGTGTACCAAAAGAAAATAGGCTGCCCCATAAACGTCGGCGACTTGGCTTTTCTGACAGCTACAAATGCAATAATGAGTATGATTTGGGGCGAGACGTTGGAAGGAGAAGAAGGAGCTGCAATTGGGGTTGAATTTAGAGCCGTTGTGTCTGAACTTATGGTGTTACTAGGGAAGCCAAATGTTTCGGATCTTTTCCCCGCTCTGGCCTTGTTAGATTTACAAGGAATTGAGAGAAGAACCAGAAAGGTCTCCCAATGGATTGATAGGCTCTTTGATTCTGCCATTGAAAAGCGAATGACTGTGACTGGGAAGGGAGAAAATAACTCAAACAAAGATTTCCTGCAGGTTCTCATGGAGCTTACAAAGAGTGACAGTGAGACAACATCAATGACCATGAAGGAGATCAAAGCCATCCTCATAGATATAGTGGTGGGTGGAACCGATACAACATCAACAACATTGGAATGGGTGGTAGCAGAGCTGATGCAGCATCCTGAGGCAATGGAGAGAGTTCATGAAGAGATGGATACTGTAATAGGATTGGACAACGGTATTGAATTAGAATCACAATTGTTCAAATTAGAGTACTTAGAAGCTGTCATAAAGGAAACACTTCGTTTGCATCCTCCTCTTCCCTTTTTGGTACCTCGTTGCCCAAGTCAAACTAGCACTGTTGGTGGATATACCATTCCGAAAGGTGCACAGGTATTTTTGAACGTGTGGACTATACAGAGAGATCCTGACATTTGGGAAGATGCATTAGAATTTCGACCAGAGAGGTTTCTGAGTGATGATGGCAAGTTGGATTACTGGGGCAACAAATTTGAGTATCTTCCTTTTGGTTCTGGAAGAAGAATCTGTGCAGGGCTACCTCTTGCCGAAAAGATGATAATGTTTATGCTAGCTTCCTTCTTGCATTACTTTCAGTGGAGATTACCCAGTGGAAAAGTGCTTGAATTTTCAGGTAAATTTGGCGCCACTAGTCGTTATTCCAAAGCCTAG 1530 0.4484 MVMSSFSVKWSSLWLNATNLHPILTLLLTLITVLWLLRWFRNSTNEASPLPPGPTGLPFLGYLPFLGTHPHLKFHKLAQLYGPIYKLTLGTKTVVVVSSPSLVKEIVRDQDTIFANREPLIAALVALYGGTDIASLPHGPQWRKARKILVREMLSSTNLTNSFPHRRVEVKKSIRYVYQKKIGCPINVGDLAFLTATNAIMSMIWGETLEGEEGAAIGVEFRAVVSELMVLLGKPNVSDLFPALALLDLQGIERRTRKVSQWIDRLFDSAIEKRMTVTGKGENNSNKDFLQVLMELTKSDSETTSMTMKEIKAILIDIVVGGTDTTSTTLEWVVAELMQHPEAMERVHEEMDTVIGLDNGIELESQLFKLEYLEAVIKETLRLHPPLPFLVPRCPSQTSTVGGYTIPKGAQVFLNVWTIQRDPDIWEDALEFRPERFLSDDGKLDYWGNKFEYLPFGSGRRICAGLPLAEKMIMFMLASFLHYFQWRLPSGKVLEFSGKFGATSRYSKA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02602 509 SUPERFAMILY Cytochrome P450 51 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 Pfam Cytochrome P450 51 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 Gene3D Cytochrome P450 35 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Vimu11g02602 509 PANTHER OS08G0547900 PROTEIN 10 505 - -
Vimu11g02602 509 FunFam Predicted protein 319 508 - -
Vimu11g02602 509 PRINTS E-class P450 group I signature 78 97 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 195 213 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 102 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g02602 509 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02602 Vimu-Chr11 46264150 46265814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02602 16 501 Cytochrome P450 AT4G12320 47.755 2.82e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02602 - - gmx:100785686 779.245