Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02573 ATGACTGCGGATGAAGTCGGAAGTAGCTCCGAGTGGAGCAAAGAACAGGATAAAGCATTTGAAAATGCCTTGGCAATTCATCCTGAAGATGCTTCTGACAGATGGGAGAAGATTGCGGCTGATGTACCAGGGAAAACCTTGGAAGAGATTAAGCACCACTACAAGCTCTTGGTTGAAGATGTTAATCAGATTGAATCTGGTTGCGTTCCTTTGCCATCTTATAATTATCCTTCAGAGGGCTCAGCAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAGGGAGGCAGTTCATGGAATAGTAACAACGAATCGAGTCATGGAAATAAGGCTTCAAAATCAGATCAGGAACGACGAAAGGGTATTGCATGGACAGAGGATGAACACAGGTTAGTTTCTCTTTGCTTATTCAGAAAACCTATATATTCTAGTATAAGGCATGCACAATCCTTATCTTTTTTGCATAAGGGGTGGCATGCTACCATAATCTGTGGTCTCAGAACCCTTAACACTGCTATGAGAGGAGTCATTTGCCAATCCTGCAATTCTGTCCAAAGATCTTGTAGCTTAAGATGCAAGTTATACAGTTTTAATGCATTTTTCCCTTTAGCCAAGAATGAATCTTCCATGTTATTTCTTCTTGGCTTGGAAAAATATGGAAAAGGTGACTGGCGAAGCATATCAAGGAACTTTGTAGTGACAAGAACACCTACACAAGTTGCAAGCCATGCCCAAAAGTACTTCATTCGGTTGAACTCGATGAATAAAGATAGAAGGAGATCCAGCATACATGATATCACCAGTGTCAACAATGGTGATGTTTCAGCACCTCAAGGACCAATTACTGGCCAAACAAATGGTTCTGCAGCAAATTCTGGAAAACCAACGAAACCAGCCCCTCCAACCCCAAGTGCTGCCCCAAGTGTAGGAATATACGCTGCTCCTACCATTGGACAACCTATAGGAGGACCTCTTGTATCTGCAGTTGGCACCCCAGTGAACCTTCCTGCCCCAGCACACATGGCATACGGTCTTGGTGCCCCGGTTCCTGGGACAGTTGTTCCTGGAGCCCCAATGAACTTGGGTCCTGTGCCATACCCCATGCCACATACATCTGCTCATAGATGA 1125 0.4453 MTADEVGSSSEWSKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEEIKHHYKLLVEDVNQIESGCVPLPSYNYPSEGSASHASDEGAGKKGGSSWNSNNESSHGNKASKSDQERRKGIAWTEDEHRLVSLCLFRKPIYSSIRHAQSLSFLHKGWHATIICGLRTLNTAMRGVICQSCNSVQRSCSLRCKLYSFNAFFPLAKNESSMLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSAANSGKPTKPAPPTPSAAPSVGIYAAPTIGQPIGGPLVSAVGTPVNLPAPAHMAYGLGAPVPGTVVPGAPMNLGPVPYPMPHTSAHR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02573 374 MobiDBLite consensus disorder prediction 258 306 - -
Vimu11g02573 374 CDD SANT 11 58 IPR001005 -
Vimu11g02573 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 251 IPR017930 -
Vimu11g02573 374 SMART sant 8 60 IPR001005 -
Vimu11g02573 374 SMART sant 199 249 IPR001005 -
Vimu11g02573 374 MobiDBLite consensus disorder prediction 264 294 - -
Vimu11g02573 374 Gene3D - 204 253 - -
Vimu11g02573 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 249 IPR006447 GO:0003677
Vimu11g02573 374 Gene3D - 3 71 - -
Vimu11g02573 374 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Vimu11g02573 374 FunFam transcription factor MYB1R1 201 252 - -
Vimu11g02573 374 FunFam Transcription factor SRM1 4 71 - -
Vimu11g02573 374 ProSiteProfiles SANT domain profile. 209 251 IPR017884 -
Vimu11g02573 374 Pfam Myb-like DNA-binding domain 210 247 IPR001005 -
Vimu11g02573 374 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Vimu11g02573 374 PANTHER TRANSCRIPTION FACTOR KUA1 8 370 - -
Vimu11g02573 374 SUPERFAMILY Homeodomain-like 206 252 IPR009057 -
Vimu11g02573 374 MobiDBLite consensus disorder prediction 93 108 - -
Vimu11g02573 374 MobiDBLite consensus disorder prediction 77 119 - -
Vimu11g02573 374 CDD SANT 210 247 IPR001005 -
Vimu11g02573 374 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Vimu11g02573 374 MobiDBLite consensus disorder prediction 10 35 - -
Vimu11g02573 374 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Vimu11g02573 374 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02573 Vimu-Chr11 45540700 45546860 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g02573 Myb_DNA-binding 4.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02573 - - nnu:104591730 411.379