Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02572 ATGGAACAAGCGTCGAAGAAGCAAATCTCAAGATCATTCAGACCCTTGTATTTCTTCTTCCTTTTGTTTAGTTTTTTGTATGTTGTCACTTGTGCTGCTGAGCGCATCTTTTTGAATCATCAAGTTGTAACAAATTACACATTCGCTCTCTTAACAGGGATTTATAAACCTGCAGAGTTTTGGCAGCTTGAAGATCATATACCACAACCAACAAAAAGGAGGCACAGATCATGTGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGATAATCTGCTTGGAAAAGGAGGATTTGGCAGGGTTTACAGAGGCAATTTGAAGTCAGGAGAGGTTGTAGCAATAAAAAAAATGGAGCTGCCAGCAATGAAAGCAGCAGAGGGGGAGCGTGAATTCCGTGTAGAGGTTGACATATTAAGCAGACTTGACCACCCAAACCTTGTTTCTTTGATAGGATATTGTGCTGATGGGAAGCACAGGTTCCTAGTTTATGAATATATGCATAATGGGAACCTGCAACGTCATTTGAACGGAATTGGAGAAAGAAAAATGGATTGGCCTCTCAGACTCAAAGTGGCACTGGGAGCTGCAAAAGGGCTTGCTTACCTTCATTCAAGTTCTTGTCTTGGAATTCCTATTGTTCATAGAGATTTCAAATCCACCAATGTTCTTTTAGATGCCAATTTTGAAGCAAAGATATCTGATTTTGGGCTTGCCAAGCTGATGCCAGAAGGACAAGAAACACATGTGACAGTCAGAGTACTTGGTACCTTTGGTTATTTTGATCCAGAGTATACATCGACAGGAAAACTCACAGTACAAAGTGATGTGTATGCTTTTGGGGTTGTTCTTCTAGAGCTTCTCACAGGACGTCCAGCTTTAGATCTAAACCAGGGTCCAAATGATCAAAACCTAGTACTACAGGTGAGGCACTTACTGAAAGAGAGAAAGAAGCTTCGTAAGGTGATAGATGCAGAGATGGCTCGAAATTCTTACACCATTGAGTCTATATTCATGTTTGCAAATCTGGCTTCACGATGTGTTCATGCGGAGAGTAATGAAAGACCTTCAATGGTAGATTGTGTCAAAGAAATCCAAATGATTATCCATACCAATTCAAAGGGCTTGGGAATGGTTAGGCATAGCTTCAGAATGGTCTAA 1173 0.4075 MEQASKKQISRSFRPLYFFFLLFSFLYVVTCAAERIFLNHQVVTNYTFALLTGIYKPAEFWQLEDHIPQPTKRRHRSCVFTLKEMEEATCSFSDDNLLGKGGFGRVYRGNLKSGEVVAIKKMELPAMKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQRHLNGIGERKMDWPLRLKVALGAAKGLAYLHSSSCLGIPIVHRDFKSTNVLLDANFEAKISDFGLAKLMPEGQETHVTVRVLGTFGYFDPEYTSTGKLTVQSDVYAFGVVLLELLTGRPALDLNQGPNDQNLVLQVRHLLKERKKLRKVIDAEMARNSYTIESIFMFANLASRCVHAESNERPSMVDCVKEIQMIIHTNSKGLGMVRHSFRMV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02572 390 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Vimu11g02572 390 PANTHER OS01G0750732 PROTEIN 71 376 - -
Vimu11g02572 390 FunFam serine/threonine-protein kinase PBS1-like 61 170 - -
Vimu11g02572 390 Pfam Protein kinase domain 93 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02572 390 Gene3D Transferase(Phosphotransferase) domain 1 171 384 - -
Vimu11g02572 390 SUPERFAMILY Protein kinase-like (PK-like) 70 374 IPR011009 -
Vimu11g02572 390 ProSiteProfiles Protein kinase domain profile. 92 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02572 390 FunFam receptor-like serine/threonine-protein kinase NCRK 171 381 - -
Vimu11g02572 390 CDD STKc_IRAK 98 370 - -
Vimu11g02572 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vimu11g02572 390 Gene3D Phosphorylase Kinase; domain 1 62 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02572 Vimu-Chr11 45507585 45510402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02572 79 373 Receptor kinase-like Gene Family AT3G58690 46.000 2.73e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Vimu11g02572 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02572 - - gmx:100820613 608.216