Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02566 GTTCCGGCAACCTCCCCGCCAATTCCACATGGCTACATGATGAAGGCGGAACCACCGACAGCATTCCTCATGTCGGTTTCCTGCATCTCCGACTACGACCTCCTCTGTGCCGACGAAAGCTCCGGCATCCTCTCCGGAGATTCGCCGGAATGCTCGTCCGATGTAGACTCCACTTCCCCGCCGCCATCGCCGCTACCTTCCTCGGAAGACTATTCAATCGCTAGTTTCATCGAACACGAGCGCAACTTTGTCCCCGGATTCGACTACCTCTCCAGGTACCAATCTCGCTCCCTCGACGCCGACGCCAGAGAGGAATCCGTTGCATGGATTCTCAAGGTACATGCGTATTATGGCTTTCAACCTTTAACGGCGTACCTTGCCGTCAACTATATGGATCGGTTTATGGATTCTCGCCAGTTACCGCAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTGCATGTTTGTCTTTGGCAGCAAAGATGGAGGAACCTCTGGTTCCTTCTCTCTTGGACCTTCAGATAGAAGGTGCAAAGTACTTATTTGAGCCGAGAACAATTCAGGCTGGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCCGCAGCCATACTTTCCGCGGCTAAGGAAATTCCTAATTGGGCTGTCCTTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAATTATTGCGTGCTACCAGTTAATGCAAGAACTTGTGGTTAACAGTAACCGCAGAAAACTCCCTTTGGTGTTGCCGCAGTTGCGAGTAACAACTCGGACTCGAATGAGGTCAAGTGTCTCGTCATTCTCATCGTCATCCTCTTTCTCCTTGTCTTGTAAGAGGAGGAAATTAAATAACTGTTTGTGGGTAGATGACAAAAACTCCGAGTGA 909 0.4994 VPATSPPIPHGYMMKAEPPTAFLMSVSCISDYDLLCADESSGILSGDSPECSSDVDSTSPPPSPLPSSEDYSIASFIEHERNFVPGFDYLSRYQSRSLDADAREESVAWILKVHAYYGFQPLTAYLAVNYMDRFMDSRQLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYLFEPRTIQAGFLAYRPSCIAAAAILSAAKEIPNWAVLKPEHAESWCEGLRKEKIIACYQLMQELVVNSNRRKLPLVLPQLRVTTRTRMRSSVSSFSSSSSFSLSCKRRKLNNCLWVDDKNSE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02566 302 ProSitePatterns Cyclins signature. 103 134 IPR006671 -
Vimu11g02566 302 SUPERFAMILY Cyclin-like 178 256 IPR036915 -
Vimu11g02566 302 Gene3D - 86 188 - -
Vimu11g02566 302 Gene3D - 75 85 - -
Vimu11g02566 302 FunFam D6-type cyclin 87 190 - -
Vimu11g02566 302 Pfam Cyclin, N-terminal domain 74 184 IPR006671 -
Vimu11g02566 302 SUPERFAMILY Cyclin-like 72 188 IPR036915 -
Vimu11g02566 302 MobiDBLite consensus disorder prediction 46 67 - -
Vimu11g02566 302 CDD CYCLIN_AtCycD-like_rpt1 102 188 - -
Vimu11g02566 302 SMART cyclin_7 108 208 IPR013763 -
Vimu11g02566 302 PANTHER CYCLINS 73 174 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02566 Vimu-Chr11 45321452 45325039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02566 24 301 Core Cell Cycle Gene Families AT1G70210 48.802 4.06e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02566 K18810 - gmx:100818190 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03777 7 33362169 33366246 Vimu11g02566 11 45321452 45325039 PCT