Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02556 ATGATTGTCACTCGTTCTGCTGTGATGCTTCATCTTCAAAACCCACCAATTCGCTACCAGTTCTTCTCCCACTTCTTCAAACCAACCTTCCCTTCTATATTCAAATCTCGTCCCTTTTCTCTGACCACTCCACGTCCAACACATGCTATACCCTTTGTTAATGCTGTTGCATCACCTTCATCATCACAAGCTTCCAATGGCAGAGATACTTTCTTTGCAGAAGAAAACGTTTCCTGGACTTCACTTGGTCTCTCTGATACCATTTCTAGAGCTCTCTCTGATATTGGCCTCAACAGACCCTCTCTCGTTCAGGCTTCTTCAGTACCGTCTGTGATGTCAGGGAAGGATGTTGTTATTGCCGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTTATTGATAAGCTAAGGGATGCCCAGGAACATTCTCTACATGCTATATCTGATCAGGAAGTGACCCCGACACAGAAAGTTCTGCTCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAAGATGGCCAGCAGTCTACGTAGGGATGATGATGAGGCGATAGTCAGTGTGGCTGCCATTTGTGGTAGGCAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGCAATTTATGCGCGGTGTTAAATATGTGGTGTTTGATGAAGCCGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGTTTGATAAATTTGCTCCGCTTTGATGAAAAGGTCTTGTCTCGATCAAAAAAATCAGTAGCAGAGTTTTCAACGAAAGATGAATCTTCCTTGTCATCAGAAGCTGCTTTTGAAGGTGAAGAGGAACTTCAAACTGAAGCCACCTTAGAAGAGGATGACACTGATAAAGAGGATGATATTGTTGATATTAATAATGAAGACACATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGAAAAACTTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCAACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGATATTGAAACATATGTTTCCTGATGCTGAATGGATTTGTGGAAACTATCTTCATTGCCACAATCCGAGGTTTTTATATTTTTGTGTTATTATCAATCACGGCATCTCATTTTTTGACATTGTTACTCAGCTGCTCCTGGTGAAACAGAAAATGATTAAATGTCTTAATGATGATTCTGTTGATTCTGAACTGGAGTTGAGAAAACTGGAATGTATGCGATTGGAGCAAAAATGGATAGAAGTTACCGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCAAATACTGTGGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGAATTGAATGTTCACGCTATCATAAGAATTGCACATTGGAGGAACGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGAGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGCTTTTTGTGGTATGGGTGGTATCAAGGTTATGCAGCATGTCTCAGCTGCAAAATGAAGAATGTTGTGATGCCAGCATGGCTGTGCTTGTTGGGACTAGTCAAAAGGTTAGCACACAGTCAGACCAGGGGGGCTCTGGGGCCGAGTTCTGGTGGGAAGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACCGAATCCAACAGGGAACTTGTCGATGCAGTTCGTTGGGCAGAGAAACGTGGTTCACATTTGATGCTGGTCATGTATGATGCCGGAGTTAACTAA 1971 0.4267 MIVTRSAVMLHLQNPPIRYQFFSHFFKPTFPSIFKSRPFSLTTPRPTHAIPFVNAVASPSSSQASNGRDTFFAEENVSWTSLGLSDTISRALSDIGLNRPSLVQASSVPSVMSGKDVVIAAETGSGKTYSYLVPLIDKLRDAQEHSLHAISDQEVTPTQKVLLILCPNVQLCEQVVKMASSLRRDDDEAIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMQFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKVLSRSKKSVAEFSTKDESSLSSEAAFEGEEELQTEATLEEDDTDKEDDIVDINNEDTSVKQRDWRRVRKTYERSKQYVFVAATLPVNGKKTAGGILKHMFPDAEWICGNYLHCHNPRFLYFCVIINHGISFFDIVTQLLLVKQKMIKCLNDDSVDSELELRKLECMRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQLFVVWVVSRLCSMSQLQNEECCDASMAVLVGTSQKVSTQSDQGGSGAEFWWEADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRWAEKRGSHLMLVMYDAGVN 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02556 656 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 447 654 IPR001650 -
Vimu11g02556 656 CDD DEADc 88 269 - -
Vimu11g02556 656 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 369 IPR014001 -
Vimu11g02556 656 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Vimu11g02556 656 MobiDBLite consensus disorder prediction 295 310 - -
Vimu11g02556 656 CDD SF2_C_DEAD 435 625 - -
Vimu11g02556 656 Pfam DEAD/DEAH box helicase 103 268 IPR011545 GO:0003676|GO:0005524
Vimu11g02556 656 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 636 - -
Vimu11g02556 656 Pfam Helicase conserved C-terminal domain 471 616 IPR001650 -
Vimu11g02556 656 MobiDBLite consensus disorder prediction 287 310 - -
Vimu11g02556 656 Gene3D - 431 646 IPR027417 -
Vimu11g02556 656 SMART helicmild6 484 616 IPR001650 -
Vimu11g02556 656 SMART ultradead3 96 388 IPR014001 -
Vimu11g02556 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 628 IPR027417 -
Vimu11g02556 656 Gene3D - 57 367 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02556 Vimu-Chr11 45221257 45226758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02556 67 262 Eukaryotic Initiation Factors Gene Family AT3G13920 25.359 4.53e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02556 - - gmx:100789323 826.239