Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02546 ATGAAGAAGGTTGTGAAGAGAGTGAAGAGGAGAATAAAGATGAGAGTAAGCAAAACAACAATAAAGGAAGCTCAAGCAACAACACTGGAAGAAAACGAGAAGAAGGCAACAGTGAGACCTTATATTAGATCCAAGTTGCCTCGGCTACGTTGGACACCTAATCTTCATCTTCGCTTTGTTCCTGCTGTTCAAAGACTCGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAATTGATGAATATCAAAGGTTTGAGTATTGCTCATGTCAAGAGTCATTTACAAGTAAAATCATGTGCTGGCTAG 309 0.4078 MKKVVKRVKRRIKMRVSKTTIKEAQATTLEENEKKATVRPYIRSKLPRLRWTPNLHLRFVPAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQVKSCAG 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02546 102 Gene3D - 46 99 - -
Vimu11g02546 102 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 27 96 IPR046955 GO:0003700
Vimu11g02546 102 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 97 IPR006447 GO:0003677
Vimu11g02546 102 SUPERFAMILY Homeodomain-like 45 96 IPR009057 -
Vimu11g02546 102 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02546 Vimu-Chr11 44987931 44988379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02546 37 97 G2-like Transcription Factor Family AT2G42660 78.689 2.62e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu11g02546 Myb_DNA-binding 8.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02546 - - gmx:100802192 132.109