Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02543 ATGGACTCCAACACTATCGTTTCATGGCCGAGGATGTCAGAAAACATTGAGGGTTTTGCCCTCTCACCCAACAAATCGGAAGAGGTTCATGTTTTAGCAGTTGATGACAGCCTCGTTGATCGCAAAGTCATCGAACGCTTGCTCAAAGTCTTAGCTTGCAAAGTTACTGCTGTTGATAGTGGGCTGAGAGCACTGCAATTGCTTGGACTATTGGACGAGCAGAAAATTCCCTCTGAAACTAATGGTTTTGCTGGTTTAAAGGTGGATCTAATTATCACAGACTACTGCATGCCTGGAATGACGGGTTATGAGTTACTGAAGAAAATCAAGGAATCGTCCACTTTCAAGGAAACTCCTGTGGTGATAATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAGGGTGCAGAGGATTTCATAGTTAAGCCAGTGAAGTTATCTGACGTTAAGCGTTTGAAGGATTACATGACAACAAAGGAGGCTAAGGTTGAAGGCCAAGTCAGGGAAGGGATCCTCAAAAGGAAGCTCTTAGACACTTCTGACGTCTCATCATCATCACCACCGTCTATTTCCTCATCATCTTCAACCTCAGTGATTGACTCTCCAATCAGACGGCTTAAAATGACCAGCACTGATTGA 651 0.4424 MDSNTIVSWPRMSENIEGFALSPNKSEEVHVLAVDDSLVDRKVIERLLKVLACKVTAVDSGLRALQLLGLLDEQKIPSETNGFAGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEAKVEGQVREGILKRKLLDTSDVSSSSPPSISSSSSTSVIDSPIRRLKMTSTD 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02543 216 CDD REC_typeA_ARR 31 156 - -
Vimu11g02543 216 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Vimu11g02543 216 SMART REC_2 29 160 IPR001789 GO:0000160
Vimu11g02543 216 SUPERFAMILY CheY-like 29 156 IPR011006 -
Vimu11g02543 216 Gene3D - 29 198 - -
Vimu11g02543 216 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Vimu11g02543 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 177 IPR045279 GO:0009736
Vimu11g02543 216 MobiDBLite consensus disorder prediction 182 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02543 Vimu-Chr11 44927538 44928616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02543 23 208 Response Regulator Gene Family AT1G59940 59.330 8.61e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g02543 Response_reg 1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02543 K14492 - gmx:100527828 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02543 11 44927538 44928616 Vimu10g01144 10 11032524 11038331 ECH
Vimu11g02543 11 44927538 44928616 Vimu11g02543 11 44927538 44928616 ECH
Vimu7g04015 7 37941574 37942850 Vimu11g02543 11 44927538 44928616 PCT