Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02535 ATGTCTTTCAATATCATGCTCCAATCCTCGCCCTTCCTCGCCCTTCTTTTTCTTTTACTTCTTCTTCACACTTTCTCAATACCAACATGTCATTGCCAAACCACCACTTCTCCTCCTCAGAACATCGAAACTTTCTATCCAAATCAAACTTTAGCACCACAAAAACCTGAGACATCACCACAGACACAACAACCACCACCAGCTGCCCCTGCTTCTTCCCGTGGTAAGATAGCCAAGGCGGTGGCTGCAACTGCAGCCAGCACCATCGTTTTTTGTGGTTTGATTTTCTTTCTGGTGCAGAGGTTCTTGAGGGCCAGAAAGAGAAAGAGAGAGGTGATAAACAACACTTCTTCTGGTGGAGATAACCGTGTTTTGCCTCAGGGAAATGTGTTTGAGAGAATTGATGGAAATGTGAAGGGGTTGATTGTGGATGAGGATGGTTTGGATGTGGTTTATTGGAGAAAGCTTGAAGGGAAGAACTCTGACAAGGATCTATATAAGGAGGTTTTGAGTAGTCCCAGAAATAAAGAAAAAGAAGATGGTGATGATGAAAATCATGCCAAGAAGTCCAACTCCGTCCAAGAAGTTCCTCTCCTTAGAGGGAAATCTTCAACTTCCCACTTGAATGTATATCCAGAAGATGATGAGCCATACAGATTTTCCCCACTTCCTTCTCCTCCTGCTTCTTATACTTCTGTTTCTGCTCCCACTCCTTCTACTCTTCCTTCATCAGCTGGGGTTGTTATCAAGGGTGCTCAGAAACCAGACTCTCCAACTCAACCCTCAACTCCGCCCCCTCCCGTTTCACCATCAACACCTTCGTCCTCTACTTCTGTTTCAGCAGTTCCGAAAGCAAATAATCCTGCGCCGGCACCTCCCCCTCCCCCAATCCCAGCCCGAAGGAGTCCGGCACCACCTCCTCCTCCAGCCTCATCAAAAGCACCACCTGCTCCCATTCAAATTCCAGCTATTAAGCAAGGAAACTCTTCAGGAAAAGGCATCCCAGAAACCACCAATGACCAAGTGAAGCTGAAGCCTCTGCACTGGGATAAGGTCAATACTAATAATGCTGATCACTCCATGGTTTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTCATGGAAGCTCTCTTCGGTTATGTCGCCACCAACCGGAGATCTCCCAAAGGAAAAAGTCACTCAGCCATTCCAAGCAACGATGCCTCAGCTTCATCTGCAAAAGTTTTCCTTCTTGACCCGAGAAAATCACAGAACATTGCTATTGTTCTCAAATCTCTTGCAGTCTCACTAGGTGAAATTGTTGATGCACTCACTGATGGTATGGGCCTCAAACCAGATACTCTTGAAAAGCTTGCTAGAGTTTCCCTAACAGAAGAAGAGCAATCTCTCATCCTTGAATACAAAGGAGACCCGGCAAGACTTGCAGCAGCTGAATCTTTCCTTTATAATCTCCTCAAAGCTGTTCCCTCATCTTTTAAGCGCTTGAATGCCATGCTATTCGGGTTGAACTATGACTCGGATATTCAAGAAACCAAGGAATCTCTGCAGATCATTGAACTGGGTTGTAAGGAGCTTAAAAGCAAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTCAAGGCAGGAAACAGAATGAATGCAGGAACTGCAAGGGGCAATGCACAAGCTTTCAATTTGGCTTCTCTAAGGAAACTCTCTGATGTTAAGAGCACCGATGGAAAAACCACATTACTTCATTTTGTGGTTGAAGAGGTAGTCCGTTCTGAGGGAAAAAGGGTTGCTCTTAACCGCAATGGCAGCCTGAGAAGTAGCAGCAGTAGGAGCAGCAGCAGTAGCAATGGAAACTATGACAACAATGTCGCTTCAAATGAACTGATAGAAAGAGAATATACGACACTAGGATTGCCAATTGTGGGAGGGATCAGTTCTGAGTTATCCAATGTTAAGAAAGCAGCACAAATAGATTATAACAATTTAGTTAATTCAATCTCGGCCCTCTCAACCCGGTTAGTCAAAGTTCAAGAACTGGTTTCCTTGTGTGGAAATAACGAAGAAGGACATTTTGTAAAAGAAATGGATCATTTTCTTAGAAATGCTGAGGAAGAGCTGAAATTATTAAGGGAGAAGCAAGCAAGTGTGTTGCAGCTTATCAAGAAAACAACACAGTACTATCAAGGAGGAGCTTCAAAAGAAACTGCAGAAGACAATCTTCAATTGTTTGTCATAGTTAAGGATTTTCTGGGAATGGTTGATCAAGTATGCATTGAGATTGCACGTGATATGCAGAAGAGAAGATTTCCTCCTAAGGTCATTTTTGGGTAG 2334 0.44 MSFNIMLQSSPFLALLFLLLLLHTFSIPTCHCQTTTSPPQNIETFYPNQTLAPQKPETSPQTQQPPPAAPASSRGKIAKAVAATAASTIVFCGLIFFLVQRFLRARKRKREVINNTSSGGDNRVLPQGNVFERIDGNVKGLIVDEDGLDVVYWRKLEGKNSDKDLYKEVLSSPRNKEKEDGDDENHAKKSNSVQEVPLLRGKSSTSHLNVYPEDDEPYRFSPLPSPPASYTSVSAPTPSTLPSSAGVVIKGAQKPDSPTQPSTPPPPVSPSTPSSSTSVSAVPKANNPAPAPPPPPIPARRSPAPPPPPASSKAPPAPIQIPAIKQGNSSGKGIPETTNDQVKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRRSPKGKSHSAIPSNDASASSAKVFLLDPRKSQNIAIVLKSLAVSLGEIVDALTDGMGLKPDTLEKLARVSLTEEEQSLILEYKGDPARLAAAESFLYNLLKAVPSSFKRLNAMLFGLNYDSDIQETKESLQIIELGCKELKSKGLFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRVALNRNGSLRSSSSRSSSSSNGNYDNNVASNELIEREYTTLGLPIVGGISSELSNVKKAAQIDYNNLVNSISALSTRLVKVQELVSLCGNNEEGHFVKEMDHFLRNAEEELKLLREKQASVLQLIKKTTQYYQGGASKETAEDNLQLFVIVKDFLGMVDQVCIEIARDMQKRRFPPKVIFG 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02535 777 MobiDBLite consensus disorder prediction 323 337 - -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 600 621 - -
Vimu11g02535 777 SMART it6_source 334 769 IPR015425 -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 258 272 - -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 42 73 - -
Vimu11g02535 777 PANTHER FORMIN-RELATED 15 765 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu11g02535 777 MobiDBLite consensus disorder prediction 225 246 - -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 42 58 - -
Vimu11g02535 777 Pfam Formin Homology 2 Domain 337 754 IPR015425 -
Vimu11g02535 777 Gene3D Formin, FH2 domain 354 770 IPR042201 -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 601 621 - -
Vimu11g02535 777 SUPERFAMILY Formin homology 2 domain (FH2 domain) 347 769 - -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 196 210 - -
Vimu11g02535 777 Coils Coil 693 720 - -
Vimu11g02535 777 ProSiteProfiles Formin homology-2 (FH2) domain profile. 334 777 IPR015425 -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 167 190 - -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 286 316 - -
Vimu11g02535 777 MobiDBLite consensus disorder prediction 167 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02535 Vimu-Chr11 44721879 44724311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02535 310 769 FH2 protein (formin) Gene Family AT1G70140 55.724 2.40e-166 497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02535 11 44721879 44724311 Vimu10g01143 10 11015777 11018006 ECH
Vimu11g02535 11 44721879 44724311 Vimu11g02535 11 44721879 44724311 ECH
Vimu7g04014 7 37920963 37923401 Vimu11g02535 11 44721879 44724311 PCT