Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02529 ATGATGAGTGGTGGTGGTCAGAGACTAACCACCAATGATGCCTTGGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACTGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTACCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCTGTTGAATTTGCAGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTACGAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACGCATTTTCTTCCTGATACTTCAGGAACAGCCTTTAATCACTATGCTTCTACTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCAATGCCAACATTGAGGCAAATGCATGTTGAAAAGAGAGAGAGGAACATTGCTTCACAAGGTGATCACGAGTTTCGTGCTGACTATCCTGATCCAGAACACGACAGAGGTTTGATCAAGGCTGATAAGGATCAGAGGAGGCGTGGTGAGAAGGAAAAGGAAAGTAGAGAAGAGAAAGACAGGAGACAGCGGGAAAGGGATGACAAAGATTATGATCATGATGGTAGTAGGGAAAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTCTGGCATTGAACCGATGCATGATACTGATGAAAATTATGGCATGCACCCTGTCTCATATGCTTGTGACGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGATTGGTTACCTTGACAAAGTGAGGGAGAAATTACAAAGCCCCGAGGATTACCAAGAATTTTTGAAGTGCCTAAACATCTACTGCAAGGAAATAATTGCCCGTCATGAATTGCAATCATTGGTGGGCAATTTGCTGGGAAAACATGCAGACCTTATGGAGGGATTTGATGAATTTTTGACTCAATGTGAAAAGAATGAAGGATTCCTTGCTGGTCTTCTGAAAAAAAAATCCTATTGGCATGAAGGACATGGACCTAAACCAATGAAGGTTGAGGATAGGGACCGTGATAGGGATGATGGGACGAAAGAAAGGGATCGTCGAGAAAGGGACAAATCCAATGCATCTGCTAACAAGGATGGTTCTGCTCCTAAGATGTCTCAATATGGCAGCAAAGATAAGTATTCAGGAAAGCCTATAAGTGAACTGGATCTTTCCAACTGTGATCAATGCACTCCTAGTTATCGCCTTCTGCCCAAAAATTACCTAGTACCGCCAGCCAGCCAGAGAACAGAGCTTGGTGCCGAGGTGTTGAATGATTACTGGGTTTCTGTTACTTCGGGTAGTGAGGACTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAGGAACTTTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTGACAGCTCTAAATCTTAGATGCATTGAAAGACTATATGGAGATCACGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCTCTTACTGGCTGAAATCAAAGAAATTAGTGAGAAGAAAAGAAAAGAAGACGACGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGAGATCCATGAAGATCTTTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTTCCGTGTCGATCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGATACAAATAAGTCTGCCAAAAGTAGCACTGAAGTTGTTGCTGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACATAAGTAGAAATGGGGATGAAAACTTTCCATTTGAGCAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATGCTAAGGTTAAAAAGGATAATCATCTTGATTCGGACAGCTTTGCACAAAAGACTGAAGCCCTAGGGAGTAATATGCAGCAGGGTAAAATGAATATAGATGCATCTATACCTGATGAAATATCAAGAGCCGATAAGCAAGATCGTTCCACTGAACGGTTGGTGAATGCTGATGTCTCACTATCCTCGGGACTTGCTGCTACTCCATTAAGACCTGGTAATATATCTTCCGTAGGAGGAGTTGGTTTACCTTCATCAGAGGGTGCTGACTCTGCTCGACCAGTTACATCAACAAATGTGGCCATCATTGAAGACTCTAAAGTTCACAGACATCGGGAAGAATCTGTCGGACACTTCAGATGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTTTGAAGAGGATAATTTTGCAGTTTATGGACATACTAGTTCGGAGGCAGTTCATAAAGGAAAGGATAGTAACATTTCCCGACCATACCAAAACAGGCACGGGGAAGTAGTTCGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGAGAAGAAAGTCCCCATAGATCATTGGAGGATAGTGAAAATGCTTCTGAAAATGGAGATATTTCTGGCACAGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGGATGGGGGTCATGATCATGATGACAAGGCTGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAATGATGTTGAAGGGGATTGTGCCTCATTGCCATATTCAGAACGCTTTCTTGTCAATGTAAAGCCTCTGGCAAAGTATGTTCCTCCGACGTTGCATGAGAAAGAAAGGATTGGTCGAGTCTTTTATGGAAACGATTCCTTTTATGTGCTATTTAGACTCCATCAGACATTGTATGACAGGATACGATCTGCAAAGGTTAACTCATCGTCTTCTGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAACGCCCTCTACAATTTACTAGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAGCAAGCTGCTTCAATTATATGCATACGAAAAATCAAGAAAACCTGGAAGATTTGTTGATTTAGTTTGTCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTGTAGGTTTTTATATCAACTCGGTTCAGCTTGTTTATTCACCTTCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATTTGATAAACCCGAAGTGACTACTGTATCAATGGACCCTAATTTTTCGGCCTATCTGCACAATGACTTCCTATCTATTGTCCCAGACAAAAAGGAGAAGTCTGGAATTTACCTGAAGAGGAATAAGCGCAAGAATGGCAGTGGTGATGAATTTTCAAGCCAGAGCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGACACTGAAGACCTTTTATATCAAACAAGAAGAAAAAAAAGGAGGTCCTTGCATCAGAGCAGTTCATGCCTTGAACAATCAAAGTCCTCAATTTCTTCAAGCAGAGAACAACGAGTTTGCAAATTATTTTCAAATTGACTATGATTCATTTTCAGCCCGAGATGGCGGAGGTGCCAGATGGAAATTGGATGTTATTTCAGAAATTCATCTTTCTTGCATTCTCTGCATCTTTCAACCAAATAAGGCAATACAGAAACGAGACGAGTGCATGAACCAGGTTCACCTGTTAGATACTGATGTTGCTTCCCCTTGGCCTCTTCTTTCTCATTCTCTTCTAATAATTTAA 4284 0.4052 MMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGTAFNHYASTRNPLLRDRSSAMPTLRQMHVEKRERNIASQGDHEFRADYPDPEHDRGLIKADKDQRRRGEKEKESREEKDRRQRERDDKDYDHDGSRENLSHKRKSACRAEDSGIEPMHDTDENYGMHPVSYACDDKSSLKSMYSPVIGYLDKVREKLQSPEDYQEFLKCLNIYCKEIIARHELQSLVGNLLGKHADLMEGFDEFLTQCEKNEGFLAGLLKKKSYWHEGHGPKPMKVEDRDRDRDDGTKERDRRERDKSNASANKDGSAPKMSQYGSKDKYSGKPISELDLSNCDQCTPSYRLLPKNYLVPPASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHLLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPCRSQGPEDTEDVVKDTNKSAKSSTEVVAGDGSPVMNPKNLNISRNGDENFPFEQSHSCKQWQPSGHAKVKKDNHLDSDSFAQKTEALGSNMQQGKMNIDASIPDEISRADKQDRSTERLVNADVSLSSGLAATPLRPGNISSVGGVGLPSSEGADSARPVTSTNVAIIEDSKVHRHREESVGHFRCEREEGELSPNGDFEEDNFAVYGHTSSEAVHKGKDSNISRPYQNRHGEVVRGEAGGENDADDEGEESPHRSLEDSENASENGDISGTESADGEECSREHEEDGGHDHDDKAESEGEAEGMADANDVEGDCASLPYSERFLVNVKPLAKYVPPTLHEKERIGRVFYGNDSFYVLFRLHQTLYDRIRSAKVNSSSSERKWRASNDTDSTDQYGRFLNALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDSKLLQLYAYEKSRKPGRFVDLVCHENARVLLHDENIYRIECVGFYINSVQLVYSPSPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSIVPDKKEKSGIYLKRNKRKNGSGDEFSSQSMDGLQIVNGLECKIACNSSKTLKTFYIKQEEKKGGPCIRAVHALNNQSPQFLQAENNEFANYFQIDYDSFSARDGGGARWKLDVISEIHLSCILCIFQPNKAIQKRDECMNQVHLLDTDVASPWPLLSHSLLII 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02529 1427 FunFam Paired amphipathic helix SIN3-like protein 92 163 - -
Vimu11g02529 1427 Gene3D Paired amphipathic helix 303 375 IPR036600 GO:0006355
Vimu11g02529 1427 FunFam Paired amphipathic helix protein SIN3 302 375 - -
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 930 979 - -
Vimu11g02529 1427 Pfam Paired amphipathic helix repeat 117 160 IPR003822 GO:0006355
Vimu11g02529 1427 Pfam Paired amphipathic helix repeat 326 370 IPR003822 GO:0006355
Vimu11g02529 1427 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Vimu11g02529 1427 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Vimu11g02529 1427 SUPERFAMILY PAH2 domain 7 76 IPR036600 GO:0006355
Vimu11g02529 1427 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Vimu11g02529 1427 Coils Coil 526 546 - -
Vimu11g02529 1427 Pfam Sin3 family co-repressor 460 550 IPR013194 -
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 196 287 - -
Vimu11g02529 1427 SUPERFAMILY PAH2 domain 89 162 IPR036600 GO:0006355
Vimu11g02529 1427 ProSiteProfiles PAH domain profile. 304 373 IPR003822 GO:0006355
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 992 1019 - -
Vimu11g02529 1427 ProSiteProfiles PAH domain profile. 93 163 IPR003822 GO:0006355
Vimu11g02529 1427 Gene3D Paired amphipathic helix 91 164 IPR036600 GO:0006355
Vimu11g02529 1427 PANTHER SIN3B-RELATED 8 1210 IPR039774 GO:0003714
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 394 426 - -
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 896 910 - -
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 394 448 - -
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 896 1023 - -
Vimu11g02529 1427 SUPERFAMILY PAH2 domain 308 373 IPR036600 GO:0006355
Vimu11g02529 1427 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Vimu11g02529 1427 MobiDBLite consensus disorder prediction 720 754 - -
Vimu11g02529 1427 Pfam C-terminal domain of Sin3a protein 1066 1314 IPR031693 -
Vimu11g02529 1427 SMART hdac_interact2seq4b 457 557 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02529 Vimu-Chr11 44650356 44660598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02529 2 89 WRKY Transcription Factor Family AT4G12020 62.222 5.32e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g02529 Sin3a_C 1.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02529 K11644 - gmx:100781798 2095.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02529 11 44650356 44660598 Vimu11g02529 11 44650356 44660598 ECH
Vimu7g04001 7 37837335 37848710 Vimu11g02529 11 44650356 44660598 PCT