Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02525 GTAGTGTTTCAATACCAAATAATGAGCAAAGCCAGGAAAAGTATGACAAAATTGGAAGCCGTGGAATACTTAAAAGAAGTACAAAAGAAATTTAAAGACGAGAAAGGAAAGTTCGAGGAGTTTTTGAAGATCATGACCGATTATAGAGTTCATAGAATTGGTGTTGGCACTGTCGTAGAAAAAGTGATGGAGATTCTTAAAAACCATGATGATCTCATGTTGGGATTCAACAAGTTTTTGCCAAAGGGATATGAAATCCTTCTTCCACCTAAGGATAAAATTCAGTTGAAAGATGCTATCAAATATGTGCAGAAGATTAAGGTTGAAAAGCTTTTTGAGGGTCACCATGATCTTGTTCGTGATTTCACTCTGTTTTTGCCGGATGCGTAA 390 0.3615 VVFQYQIMSKARKSMTKLEAVEYLKEVQKKFKDEKGKFEEFLKIMTDYRVHRIGVGTVVEKVMEILKNHDDLMLGFNKFLPKGYEILLPPKDKIQLKDAIKYVQKIKVEKLFEGHHDLVRDFTLFLPDA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02525 129 Gene3D Paired amphipathic helix 19 81 IPR036600 GO:0006355
Vimu11g02525 129 ProSiteProfiles PAH domain profile. 12 83 IPR003822 GO:0006355
Vimu11g02525 129 Pfam Paired amphipathic helix repeat 37 80 IPR003822 GO:0006355
Vimu11g02525 129 SUPERFAMILY PAH2 domain 12 82 IPR036600 GO:0006355
Vimu11g02525 129 PANTHER SIN3B-RELATED 18 107 IPR039774 GO:0003714
Vimu11g02525 129 FunFam Paired amphipathic helix protein Sin3 19 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02525 Vimu-Chr11 44586104 44587008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02525 15 92 WRKY Transcription Factor Family AT4G12020 37.179 2.93e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g02525 PAH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02525 K11644 - var:108321439 179.874