Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02520 ATGTGTACGGCGGAGAAAGACGGGATCATGCTCTTCGGCGTGCGCCTCACCGTACCCGATAACAACCCCACCGTTTTCAGAAAGAGTGCCAGCATGAACAATCTCTCCCCAAACTCTGAATCGCCTCCGCCGCACCATCCCAATGCGGGCTACGCCTCAGACGACGTCGTTCACCTCTGCCGTCGAACGCGCAAGCGAGGGATTCCGTGGACGGAGGAGGAGCACAGACAGTTCCTGTTGGGATTACAGAACGTTGGGAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAGACTCGAACGCCCACTCAGGTCGCTAGTCACGCTCAAAAGTATTTTCTCCGCCGTCACACTCACAATCGCCGCCGCCGGAGATCTAGTCTCTTCGATATCACCACAGACTCGGTGAAGGAAGAGGAAAAAGCGGTGTCGTCAGCTAGGTCGAAACAGGTTTTGCCGCCACCTCCGTCTTTGAAAATAGCTGAGTTGGACTTGAATGGGAGGTCGCTCTCACTGAAGCTGAGGTTGCCGGAGTCGGAGGAGCCGTCGCCGGTGACTTTTGAGGTTGTCTAG 576 0.5503 MCTAEKDGIMLFGVRLTVPDNNPTVFRKSASMNNLSPNSESPPPHHPNAGYASDDVVHLCRRTRKRGIPWTEEEHRQFLLGLQNVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHTHNRRRRRSSLFDITTDSVKEEEKAVSSARSKQVLPPPPSLKIAELDLNGRSLSLKLRLPESEEPSPVTFEVV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02520 191 ProSiteProfiles SANT domain profile. 70 118 IPR017884 -
Vimu11g02520 191 MobiDBLite consensus disorder prediction 25 39 - -
Vimu11g02520 191 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vimu11g02520 191 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 118 IPR017930 -
Vimu11g02520 191 NCBIfam myb-like DNA-binding domain, SHAQKYF class 65 116 IPR006447 GO:0003677
Vimu11g02520 191 Gene3D - 68 119 - -
Vimu11g02520 191 SUPERFAMILY Homeodomain-like 63 117 IPR009057 -
Vimu11g02520 191 ProSiteProfiles Myb-like domain profile. 62 114 IPR001005 -
Vimu11g02520 191 FunFam transcription factor MYB1R1 68 119 - -
Vimu11g02520 191 PANTHER TRANSCRIPTION FACTOR KUA1 5 149 - -
Vimu11g02520 191 CDD SANT 69 114 IPR001005 -
Vimu11g02520 191 MobiDBLite consensus disorder prediction 25 52 - -
Vimu11g02520 191 SMART sant 66 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02520 Vimu-Chr11 44413439 44414188 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g02520 Myb_DNA-binding 2.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02520 - - gmx:778091 261.922