Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02513 ATGGAAGGCTTGTCCTATACTGGTGCTGATACTGTAATCTATGAGAGACTGGCTGATATTAGTAATAGCATCAAGAAAGTCACCAGGGAGCATTTGGAACAATTTGGATCTGCCGGTCTTCGCACATTATGCTTAGCCTACAAAGATTTGCATCCTGATGTTTATGAAACCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGTGAAAAGAAATTGGATGAGGTGGCAGAACTTATCGAAAATGATCTCATTTTAATTGGTAGCACAGCCATAGAAGACAAGCTTCAAGAGGGTGTACCTGCTTGCATAGAGACTCTTCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCTATAAACATAGCCTATGCATGCAACTTGATAAACAATGAGATGAAGCAATTTGTGATTAGTTCAGAAACTGATGCAATCAGAGAAGTTGAAGACAGGGTACTGGCCCTTCTTGCTACCATGTTTTGTTCACAGTTCTTAGTGTTTCTGACTGGTGACCAAGTGGAGATTGCACGGTTTATCAAAGAAGAAGTGAAAAAAGAGCTGAAGAAATGCCTTGAGGAAGCACAGAACTATTTTCACTCCCTATCTGGACCAAAATTAGCTCTTGTAATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGCTCAACATCAGTTTGAATTGTCATTCTGTTGTTTGCTGTCGAGTTTCTCCTTTACAAAAAGCACAGGTCACAAGTATGGTTAAGAAAGGTGCTCACAAAATAACACTCAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGTTGGAGGGAATGCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTTCGTTACCTTGCAGACTTGCTTCTTGTTCACGGCAGATGGTCTTATTTGCGAGTTTGCAAGGTTGTCTTATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTCTGGTTTACGTTTCAAACTGGATTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCGCTACCTGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTCTATCCAAGAAGTATCCTGAACTATACATGGAAGGAATAAGAAATGAAAATATTTATTTTGTCATTTATGTCTTGATGACTACGTTTTACTTCTACGTCATGCTACTTCTAGTTCCTGTTGCTGCACTTTTCTGCGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTCCCCCTATGATTATCAGATTATTCAAGAAATGCATAGAGATGAGCTAGATAACACTGGCAGGGCACAGTTGTTGGAGATAGGGAACCAGCTTACACCAGCTGAGGCAAGGAGTTATGCAATATCTCAACTCCCACGTGAGATATCAAAGCACACCGGGTTCGCCTTTGATTCACCTGGGTATGAATCCTTTTTTGCCGCACAGCTTGGTGTATATGCCCCACCCAAGGCTTGGGATGTTGCTAGACGAGCCAGTATGAGAACCAAGCCCAAGATTGGCCAGCAGAAGTAA 1638 0.4078 MEGLSYTGADTVIYERLADISNSIKKVTREHLEQFGSAGLRTLCLAYKDLHPDVYETWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRVLALLATMFCSQFLVFLTGDQVEIARFIKEEVKKELKKCLEEAQNYFHSLSGPKLALVIDGKCLMYALDPSLRVMLLNISLNCHSVVCCRVSPLQKAQVTSMVKKGAHKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRVCKVVLYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIRNENIYFVIYVLMTTFYFYVMLLLVPVAALFCDFVYQGVQRWFSPYDYQIIQEMHRDELDNTGRAQLLEIGNQLTPAEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGVYAPPKAWDVARRASMRTKPKIGQQK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02513 545 Gene3D - 90 314 IPR023214 -
Vimu11g02513 545 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 7 410 - -
Vimu11g02513 545 Gene3D - 4 89 IPR023299 GO:0000166
Vimu11g02513 545 NCBIfam HAD-IC family P-type ATPase 246 353 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g02513 545 Pfam Phospholipid-translocating P-type ATPase C-terminal 302 410 IPR032630 -
Vimu11g02513 545 SUPERFAMILY HAD-like 82 322 IPR036412 -
Vimu11g02513 545 NCBIfam phospholipid-translocating P-type ATPase 6 410 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vimu11g02513 545 SUPERFAMILY Calcium ATPase, transmembrane domain M 323 438 IPR023298 -
Vimu11g02513 545 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 15 103 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02513 Vimu-Chr11 44248840 44252926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02513 407 544 Primary Pumps ATPases AT1G59820 73.188 3.00e-65 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02513 K14802 - gmx:100815547 697.197