Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02509 ATGGATCCGGGTGGGATGATGAACGAGGGTTCCTTTGCGAATAATGGGAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCAGTTTCCGCAAGCGATTAATGGCGGCGGAGGATTGGGTCTCCGGAGCCCGCAGTTCGAACATGGGCCGGGGCAGTTTGGGGATTTGCCTCCCAGACCCAACAATGGGCTTGGGACAAGTAACACCAGAAAGCGGCGAGACTCAGAGGACGATTCCGCTAAGACCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGCAACGGCAAATGGTGATGGTAATGGTAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAACCTCCTTTGGAACCTCCCAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAGATTAGCGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTGATAAGGTTATCGGGAAAGCGTTGGTCCTTGATGAAATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCGAGACTGAACTCCGGTATTGAAGCCTTTCCTCCTAAGGATTTTGGTCAGCATGCATTTGATCCCGCGGGCATGCCGTTCGGTTCACAAGCTCCAAGAGAGTATAGCAGAGGATCTTCACCTGAATGGTTACATATGCAGGTAGGAGGAGGTTTTGAAAGAACAACGTAG 801 0.4994 MDPGGMMNEGSFANNGSGNTAPYSLAEIWQFPQAINGGGGLGLRSPQFEHGPGQFGDLPPRPNNGLGTSNTRKRRDSEDDSAKTVSTSNAVNEGDGKRVKATANGDGNGKGEGEVSSGKPAEQSAKPPLEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCDKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQHAFDPAGMPFGSQAPREYSRGSSPEWLHMQVGGGFERTT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02509 266 CDD bHLH_AtBPE_like 135 220 - -
Vimu11g02509 266 FunFam Basic helix-loop-helix transcription factor 142 214 - -
Vimu11g02509 266 Gene3D - 142 218 IPR036638 GO:0046983
Vimu11g02509 266 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Vimu11g02509 266 Coils Coil 192 212 - -
Vimu11g02509 266 MobiDBLite consensus disorder prediction 1 22 - -
Vimu11g02509 266 MobiDBLite consensus disorder prediction 34 133 - -
Vimu11g02509 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
Vimu11g02509 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Vimu11g02509 266 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 236 IPR024097 GO:0006355
Vimu11g02509 266 SMART finulus 151 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02509 Vimu-Chr11 44197935 44199655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02509 1 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 60.669 3.78e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02509 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02509 - - gmx:100784478 463.381