Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02508 ATGCCAAAAGGAGAAATCGAGGAGTCAAATATTAAAAAGCAGAGGAAAATTATGAAAAGTTCATGTTCGTCTTCATCTTCATCTCCACCACCATCATCATCCTTACCTCCATTTCTGCTACTACCACCACCACCATCTTTACCTCCACCACCATCACCATCTTTACCTCCACCACTATCACCACCTTTAACTTTACTTGTACCACCACCACCATCTTCACCTCCAACTATACCACCACAACCATCTTCACCTCCACCTCTAGCATCACCACTATCCTTACCTCTACCACCACCGTCAAGGATGAAAGTGGTAGGGCCAAAACCTCCACCACCACGAAGGGTAGTTGTGACAAGTCCAACACCTCCATCATCAGATTTGTTAGTAGAATTCAGGAATCGAGTCACCCAATTGAATGGCTATGATCTTAAATTTGTGATGCACAAGATACTTTTCTCATCAGATGTGAAGCCAAACAATAACCGATTATCAATTCCAAAAAAGAAAATCAAATGTGATTTTCTCACTGAAGATGAGATTATGAACTTGGAAGAAAAAGAAAATAATGATAAAATTATTGGTTTGGAAGTGACTGTGTTGGACCCCTGTTTGAGAGAATATAATTTGTCGATGAAGAAGTGGACTATGAAATCAGACACCTACAATCTTGTAAAGGAGTGGAACAAGATTGTGGCCGCTAACAAGTTTAAAGAAGAGCAAGAATTACAAATATGGTCATTTAGGATATGGAGTGTGTGCGAAATTGGGGAAATTAGGGTTCGTGGGTGGGTTCGTCCTTGTGCTGGCATTTGGGAAACATTGCTTTTCCTAATTGTTGGCGGTGAATCACGTGCAAGAGTTTCGCGAAGGTCGTTGGAGTGTCAAGAGGAAGGTGATGGTCAGTGTGAACAAGGTCATGGTGAGTGTGAACAAGGTACAGGTTCTGAAATAATCGGTGAGGTGAATGACATGATAGTTGAGATATGTGAAGTTCCTGTTTCAGAAGAAAGACGTGACGGAGATGATGTTGTTGAAGGTAAAATTGAAGTTGAATGTGACGTGGGTCAGTCTGAAGGAGATGATGTTGATTTTCGTAGTTGGAGTTCTAGTGGTGAGGATGCCAATGTTGATTGCAATGTGGATGTTAATGATGACTGTATGGAAGACCTAGTTGACTGTGATATACAAGAAAAGTATTTTCTCCGATTGGACGAGACCCTCTCTTCTCTTCTATTATCACCACCTCTTCCTTATCTTCCCTCTCTAATCTCCTCACGTAACCCACGCATCCTTCGCCTTCTCGATTCTTCCACCGTTATGGCTACTGCCACTGAGAAGCTCTCCGCTTTCCAAACCGTCGTCGTCGGACTGAACGAAATCAGATCAGAATCTGATTCGTGTTTTGTTCCGTGCAGTGAGAACGAGAAGAGTGAATTCATCAACCTCGTCACCCGCTATCTCAGTGGCGAGGCGCAACATGTGGAATGGAGCAAGATCCAGACGCCTACGGACGAAGTGGTTGTGCCTTACGACACTTTGGCGCCAACTCCTGAAGTGTTGTTATATGGAAAGAAATTGGCGCAAATGACCCAGAAAGAAGCACCAGAAGCAATTCTCCAAGAAGAAGATGACCCAATTGCGGAACTCAGATACCTTGACCCAGAAACCGACCATGCCACCATAACAGACTAG 1689 0.434 MPKGEIEESNIKKQRKIMKSSCSSSSSSPPPSSSLPPFLLLPPPPSLPPPPSPSLPPPLSPPLTLLVPPPPSSPPTIPPQPSSPPPLASPLSLPLPPPSRMKVVGPKPPPPRRVVVTSPTPPSSDLLVEFRNRVTQLNGYDLKFVMHKILFSSDVKPNNNRLSIPKKKIKCDFLTEDEIMNLEEKENNDKIIGLEVTVLDPCLREYNLSMKKWTMKSDTYNLVKEWNKIVAANKFKEEQELQIWSFRIWSVCEIGEIRVRGWVRPCAGIWETLLFLIVGGESRARVSRRSLECQEEGDGQCEQGHGECEQGTGSEIIGEVNDMIVEICEVPVSEERRDGDDVVEGKIEVECDVGQSEGDDVDFRSWSSSGEDANVDCNVDVNDDCMEDLVDCDIQEKYFLRLDETLSSLLLSPPLPYLPSLISSRNPRILRLLDSSTVMATATEKLSAFQTVVVGLNEIRSESDSCFVPCSENEKSEFINLVTRYLSGEAQHVEWSKIQTPTDEVVVPYDTLAPTPEVLLYGKKLAQMTQKEAPEAILQEEDDPIAELRYLDPETDHATITD 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02508 562 MobiDBLite consensus disorder prediction 30 117 - -
Vimu11g02508 562 SUPERFAMILY DNA-binding pseudobarrel domain 146 248 IPR015300 -
Vimu11g02508 562 MobiDBLite consensus disorder prediction 1 15 - -
Vimu11g02508 562 MobiDBLite consensus disorder prediction 1 118 - -
Vimu11g02508 562 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 113 250 IPR005508 GO:0003677
Vimu11g02508 562 Gene3D - 136 254 IPR015300 -
Vimu11g02508 562 Pfam B3 domain-containing protein At2g31720-like 134 231 IPR005508 GO:0003677
Vimu11g02508 562 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 448 531 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02508 Vimu-Chr11 44142455 44150741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02508 113 261 B3 DNA Binding Superfamily AT1G05930 27.815 2.57e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02508 - - vum:124820374 254.218