Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02486 ATGGGTGCAGGAGACTACTACAAGATCCTCAAGGTGAACCGCAATGCCTCGGATGAAGAACTCAAGAAGGCATATAAGAGGTTGGCCATGAAGTGGCACCCGGATAAGAACCATCAGCACCACACTGTTACGAAAGAAGAAGCTGAGGCTAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGCGACCCCAAGAAGCGTCAGATCTATGATTTTTATGGCCACTATCCCTTGAACTCTGTGAAGGTGAAGGAGGAGAAGGGTGATGGGGGTTTTAGGGTCCCCAAGAACGAGAACGTTGGGGTGGTTGAGAGAAAATTGGTGTGCACGCTTGAGGAACTTTACAAAGGTTGCAAAAAGAAGTTGAAGATCTCAAGGACTATACACCATGAATTCGGTAAGTTGAAGACTGTGGAAGAGATACTGAAAATAGATATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCAGAAGCTAGAACTGCTGATGATCTAATCTTTGTGGTAGATGAGAAACCACATGCTTTATTCAAGAGGGATGGAAATGATTTGGTTGTGACACAAAAAATCTTACTTGTAGAGGCTCTTGTGGGAAAGACTTTCAATTTAACAACCTTGGATGGAAGAGAGCTCACAATTCAAGTGACTGATGTTGTGAAACCAAAATTTGTTTTGGTGGTCCCAAATGAAGGAATGCCCATCTCAAAGGAACTTGGAAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTTACCACACAACAGAAGTATGAGCTGAAAAAGATTTTGAGCAACACTGATGACTAA 852 0.4249 MGAGDYYKILKVNRNASDEELKKAYKRLAMKWHPDKNHQHHTVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSVKVKEEKGDGGFRVPKNENVGVVERKLVCTLEELYKGCKKKLKISRTIHHEFGKLKTVEEILKIDIKPGWKKGTKITFPGKGNQEAEARTADDLIFVVDEKPHALFKRDGNDLVVTQKILLVEALVGKTFNLTTLDGRELTIQVTDVVKPKFVLVVPNEGMPISKELGKKGNLRIKFDVMFPSRLTTQQKYELKKILSNTDD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02486 283 Gene3D DnaJ domain 2 91 IPR036869 -
Vimu11g02486 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 106 184 IPR008971 GO:0006457|GO:0051082
Vimu11g02486 283 Pfam DnaJ domain 5 72 IPR001623 -
Vimu11g02486 283 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Vimu11g02486 283 CDD DnaJ_C 104 266 - -
Vimu11g02486 283 CDD DnaJ 5 64 IPR001623 -
Vimu11g02486 283 Gene3D - 102 182 - -
Vimu11g02486 283 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Vimu11g02486 283 SUPERFAMILY Chaperone J-domain 4 79 IPR036869 -
Vimu11g02486 283 FunFam Dnaj homolog subfamily b member 100 182 - -
Vimu11g02486 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 187 271 IPR008971 GO:0006457|GO:0051082
Vimu11g02486 283 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 278 - -
Vimu11g02486 283 SMART dnaj_3 4 67 IPR001623 -
Vimu11g02486 283 FunFam DNAJ heat shock family protein 183 278 - -
Vimu11g02486 283 Pfam DnaJ C terminal domain 105 263 IPR002939 -
Vimu11g02486 283 PRINTS DnaJ domain signature 7 25 IPR001623 -
Vimu11g02486 283 PRINTS DnaJ domain signature 25 40 IPR001623 -
Vimu11g02486 283 PRINTS DnaJ domain signature 67 86 IPR001623 -
Vimu11g02486 283 PRINTS DnaJ domain signature 47 67 IPR001623 -
Vimu11g02486 283 Gene3D - 184 264 - -
Vimu11g02486 283 FunFam DnaJ-like subfamily B member 13 2 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02486 Vimu-Chr11 43759367 43761076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02486 6 74 C2H2 Transcription Factor Family AT1G74250 39.130 8.15e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02486 K09510 - gmx:100786068 506.908