Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02477 ATGGCTGGTGAGAAGCTGAATGGGGGTTCAAGCATGACGCTTCTACTCCAAAAAGAAAGGCTTCCATGCTCCCCTGAGCATATCCAAACCTTTTGGGTTCAAAACTCTCAACCTTCTTTCCAAGGCTCAAAATCCTTGATTAATGTTGTGAATGTGAGGGATAGGCCCTTCTTCCGAGGGGTTGAGAGAGAAGAAAACGATGATGACGAGGATTTTGAGGTATTCCCACATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGATGGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTAGAAAAAGACTATGGCATGCTGAAAGCTCGCTATGACATTCTCAAAAGGGACTATGACAATCTCGTTCAAGAGAATGACAAACTCAAGGAAGAGGTTTATTCTCTGATGAAGGTGATTCCCAGAGAGAAAGAGAAACAGAATTTGGATGATACCAGCTGTGATGCTGTCAACTCAGGGCATAAAGAGCAGAAGGATTTGATCATAAATGGAGGTTCTGAAAATGAATCCAAAGTGGCACTTCCTGTTATGGTAATAAGCAAACAGAAAGATGCTAATTCAGCTAAAAGTGACGTGCTTGATTCGGAGAGCCCACATTTCATTGATGGAAACCAATCCTCACTCTTTGAGCCTGCAGATTCCTCTCATGATCTGGAACCAGACCACTCGGATTTCTCACAGGATGAGGAAGACATCCTCAGTCAAAACATGCCACTTCTACCAAAGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTTCACGTTCCGGTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTGTTAA 957 0.4336 MAGEKLNGGSSMTLLLQKERLPCSPEHIQTFWVQNSQPSFQGSKSLINVVNVRDRPFFRGVEREENDDDEDFEVFPHQPGKKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKARYDILKRDYDNLVQENDKLKEEVYSLMKVIPREKEKQNLDDTSCDAVNSGHKEQKDLIINGGSENESKVALPVMVISKQKDANSAKSDVLDSESPHFIDGNQSSLFEPADSSHDLEPDHSDFSQDEEDILSQNMPLLPKFEVEYVCYDEPPENPFTFRFPVEDQTFCFWSC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02477 318 FunFam homeobox-leucine zipper protein ATHB-6-like 84 130 - -
Vimu11g02477 318 MobiDBLite consensus disorder prediction 258 272 - -
Vimu11g02477 318 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Vimu11g02477 318 CDD homeodomain 79 137 IPR001356 GO:0003677
Vimu11g02477 318 Pfam Homeobox associated leucine zipper 136 174 IPR003106 GO:0006355|GO:0043565
Vimu11g02477 318 MobiDBLite consensus disorder prediction 247 272 - -
Vimu11g02477 318 Coils Coil 142 176 - -
Vimu11g02477 318 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Vimu11g02477 318 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Vimu11g02477 318 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Vimu11g02477 318 SMART HOX_1 78 140 IPR001356 GO:0003677
Vimu11g02477 318 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Vimu11g02477 318 SUPERFAMILY Homeodomain-like 69 138 IPR009057 -
Vimu11g02477 318 Gene3D - 76 141 - -
Vimu11g02477 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 243 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02477 Vimu-Chr11 43503795 43505746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02477 22 185 Homeobox Transcription Factor Family AT3G01470 50.898 7.09e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu11g02477 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02477 K09338 - gmx:100804328 488.034