LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g02463	ATGGAAGAATTTGAGTTTGGGCAAAGGGGTATTGTTTTCAAGGTTAAGCGCAAGGATTGTGCGATCTGGGTTTTCAAATTGACCCTGTTGGAGTCTTCCCTAGCCTGTGTTGGAGATACCCCACATGGGTTGGTGGAGGACGGCGATCTCCTCTTCTCCTGTGCCAAGGACCACAACCCTACGGTCTGGTTTGCCGACAACGGTGAACGCCTCGGCACTTACCGCGGTCACAACGGTGCCGTTTGTGGTGCAGGAGATTCTGGTCGACTCATAACGGGGAGTGCGGATCAGACCGCGAAGCTATGGAACGTGCAGTCTGGTCAGCAGTTGTTCACCTTCAATTTTGATTCTCCAGCCCGGTCTGTCGATTTTTCTGTCGGGGATAAGCTCGCTGTCATTACCACTGATCCTTTTATGGAATTGCCCTCTGCAATCCATGTCAAGCGCATTGCAAAAGATCCCTCCGAACAGACTGGGGAGTCTGTGCTTCTCATTAAGGGTCCTCAGGGACGAATAAATAGAGCTGTTTGGGGACCACTCAACAGAACCATCATTAGTGCTGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGACGGGAAAATTGATTAAGGAGTCAGACAAAGAATCTGGCCATAAAAAGACAGTGACATCACTTGTCAAGTCTGCGGATGGTTCACACTTCCTTACAGGCTCTCTGGACAAGTCTGCTAGGCTTTGGGATACTAGAACGTTGACTCTTATCAAGACCTATGTCACAGAACGGCCAGTCAATGCAGTTGCAATGTCGCCACTTCTTGATCATGTGGTACTTGGAGGTGGTCAGGACGCATCAGCTGTTACAACCACTGATCATCGTGCTGGAAAATTTGAAGCCAAATTCTATGACAAGATTCTTCAAGAAGAAATTGGGGGCGTGAAAGGGCATTTTGGACCAATTAATGCATTGGCCTTTAACCCGGATGGAAAAAGAGAAGCCGACAACCATGATTATGTTAAACTACTTGGTGAAATGGATATGCACTCTCTTTATCAAATTACTGTTTAA	1050	0.4714	MEEFEFGQRGIVFKVKRKDCAIWVFKLTLLESSLACVGDTPHGLVEDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVCGAGDSGRLITGSADQTAKLWNVQSGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELPSAIHVKRIAKDPSEQTGESVLLIKGPQGRINRAVWGPLNRTIISAGEDAVIRIWDSETGKLIKESDKESGHKKTVTSLVKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKREADNHDYVKLLGEMDMHSLYQITV	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g02463	349	SUPERFAMILY	WD40 repeat-like	46	324	IPR036322	GO:0005515
	Vimu11g02463	349	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I	45	325	-	-
	Vimu11g02463	349	PRINTS	G protein beta WD-40 repeat signature	184	198	IPR020472	-
	Vimu11g02463	349	PRINTS	G protein beta WD-40 repeat signature	90	104	IPR020472	-
	Vimu11g02463	349	PRINTS	G protein beta WD-40 repeat signature	229	243	IPR020472	-
	Vimu11g02463	349	ProSiteProfiles	Trp-Asp (WD) repeats profile.	210	251	IPR001680	GO:0005515
	Vimu11g02463	349	ProSiteProfiles	Trp-Asp (WD) repeats profile.	74	112	IPR001680	GO:0005515
	Vimu11g02463	349	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	165	202	-	-
	Vimu11g02463	349	SMART	WD40_4	200	242	IPR001680	GO:0005515
	Vimu11g02463	349	SMART	WD40_4	67	103	IPR001680	GO:0005515
	Vimu11g02463	349	SMART	WD40_4	245	284	IPR001680	GO:0005515
	Vimu11g02463	349	SMART	WD40_4	158	197	IPR001680	GO:0005515
	Vimu11g02463	349	ProSiteProfiles	Trp-Asp (WD) repeats profile.	165	206	IPR001680	GO:0005515
	Vimu11g02463	349	ProSitePatterns	Trp-Asp (WD) repeats signature.	184	198	IPR019775	-
	Vimu11g02463	349	Gene3D	-	44	335	IPR015943	GO:0005515
	Vimu11g02463	349	ProSitePatterns	Trp-Asp (WD) repeats signature.	90	104	IPR019775	-
	Vimu11g02463	349	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	210	245	-	-
	Vimu11g02463	349	Pfam	WD domain, G-beta repeat	69	103	IPR001680	GO:0005515
	Vimu11g02463	349	Pfam	WD domain, G-beta repeat	211	242	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g02463	Vimu-Chr11	43256961	43260581	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g02463	46	324	Eukaryotic Initiation Factors Gene Family	AT2G46290	78.169	2.47e-160	451

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g02463	K03246		-	gmx:100793485	540.036