Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02460 ATGACAATGGGAAAGAACCTTTTTGTTCTGTTTTGTTTGGGAGTCTTAATCCCTACCCTGAATGCGAATCTCTTGGAGAATGATCAGTATTGGAAGAACCATGAAAACGAGTTTGATACATACTGGAAGGTAAGGGCAGAAAAGGCTGCAGAGGACAATAAAGCAGCATACTTTGAAGATCCATATTCAGTCTCAGGAAACTTGACTTCCACTGTCACCGAACTTATAGTTGGGAAGGATACGCGAAGGAACTTGAGGGGAAAGAACATTCATGAGGGTTGCATGGCGACGAACCCCATTGACAGGTGCTGGAGATGTGACCCCAACTGGGCCAACAACAGGCAGAAGCTTGCAGATTGTGTTCAGGGCTTTGGAAGAAACACTGTTGGAGGAAAAGGTGGTCCGATCTACGTGGTAACAGACCCTTCAGATGATAACATGGTTGACGTAAAGCCAGGAACTCTACGCCATGCAGTTACACGTAATGGCCCGTTGTGGATCATTTTTGAACGCAACATGATCATCAACCTGAAGCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGGAAGAGGCGTTGATGTCTACATTTCCAATGGTGCTGGCATCACCATCCAGTTCATCAAGAACGTGATCATTCATGGAATTAAGGTCTACGACATTTCCGTTCATGGTGGTGGGCTGATCAGAGATTCTGAGACACATTATGGGCTGAGGACTCAGAGTGATGGAGATGGCATTTCCATCTTTGGTTCTAGCAACATTTGGATCGATCACGTTTCCATGAGAAATTGCTACGATGGACTTATCGATGCCATCATGGGATCCACTGCCATTACGATTTCCAACAGCCATTTCACAGACCACAACGAGGCGATGCTGTTCGGTGCCAGCGACAGCTACGATGCAGATAAGATCATGCAAATCACTCTGGCATTCAACCACTTTGGGAAGAGATTGATTCAAAGGATGCCCAGATGTAGACATGGTTTCTTCCATGTGGTCAACAACGATTACACTCACTGGGAAATGTATGCGATTGGTGGGAGCATGAACCCCACGATCATAAGCGAGGGTAACAGATTCATTGGCCCTGACAACATATATGCTAAGGAGATCACAAAGAGAGAATACTCTCCTGAGAGCGTGTGGACACATTGGCAGTGGAGATCAATCAACGATGAGTACATGAACGGAGCATTTTTTGTACAATCTGGGCCTGAGCTTGTTAACAGACCATTCTCAAGGCAAGACATGATCAAAGCCAAGCCTGGAAGTTACGTCGGAAGGCTTACACGTTATGCTGGAAGCCTTAAGTGCAGAGTGGGTTTCCCTTGCTAA 1344 0.4606 MTMGKNLFVLFCLGVLIPTLNANLLENDQYWKNHENEFDTYWKVRAEKAAEDNKAAYFEDPYSVSGNLTSTVTELIVGKDTRRNLRGKNIHEGCMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDDNMVDVKPGTLRHAVTRNGPLWIIFERNMIINLKQELIMTSDKTIDGRGVDVYISNGAGITIQFIKNVIIHGIKVYDISVHGGGLIRDSETHYGLRTQSDGDGISIFGSSNIWIDHVSMRNCYDGLIDAIMGSTAITISNSHFTDHNEAMLFGASDSYDADKIMQITLAFNHFGKRLIQRMPRCRHGFFHVVNNDYTHWEMYAIGGSMNPTIISEGNRFIGPDNIYAKEITKREYSPESVWTHWQWRSINDEYMNGAFFVQSGPELVNRPFSRQDMIKAKPGSYVGRLTRYAGSLKCRVGFPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Vimu11g02460 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Vimu11g02460 447 Pfam Pectate lyase 180 363 IPR002022 -
Vimu11g02460 447 Gene3D - 97 440 IPR012334 -
Vimu11g02460 447 Pfam Pectate lyase, N terminus 37 85 IPR007524 GO:0030570
Vimu11g02460 447 SMART amb_all 172 369 IPR002022 -
Vimu11g02460 447 PANTHER PECTATE LYASE 18-RELATED 53 444 IPR045032 GO:0030570
Vimu11g02460 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02460 Vimu-Chr11 43210212 43211944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02460 1 447 Polysaccharide Lyase AT1G14420 57.204 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02460 K01728 - gmx:100798579 733.791