Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02457 ATGGAGCTTGCACCTGTGAAATGTGAACTGAGCCCAAGAAACCATAGGCTGCTTGTTATAGATGGTAGTGAGGTTATTGCTGCTAAGTGTGTCAAAAGGAGGCGAAGAGGTTCGTCTATGTCAGTGTTAGGTGGCAATGGACAACAAGCTGAAAAGTTAGAAGAACATAAACAACTTGGTACTGCCACCACTGTGAAGAGAAGTTCAAGGTTCAGGGGTGTTAGCAGGCATGATCTTCTCTTTCTGGGGAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACATGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTGTTTTCTCTGAATTCAAGGATAGATAGAGAAACTGACCTTTTGGGTAAATTTATGCTTCCACCAGGAGCTTATAATGATGAAGAAGCGGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTTCCTGTGTCTGATTATGAGAAAGAAATTGAGATAATGAAAACAGTAACTAAAGAAGAATATCTTGCTTCACTGAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAGGCAAGAATTGGGAGAGTGTTTGGCAACAAGTACCTATACCTTGGGACTTACACAATTGAGTACAGAGGCATAAATGCTGTGACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATCCTATTGCTTCACATGACCCTCAACCCTTTGCTACCTCTAACTCAATGCAAACAAGAGGGAACATTGAGGTATCCAACTCTAACATGCATTCATTCTCCTCAGCTGAATTAGACAGTACCAAGAAGCAAGACTTTTCCAAGTATATGAACCCTTTGAGCCCTTGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCTACTGTGTTCAGAGAATTGATGCAGAGAAATCTGAATTCCTCTAGTGAGGAAGGTGAAGAAGTTGAATTGAAATACCCACAAGAAGGCAATGATGGAAATGGAGGGACTTATTACAGTGAAAACACCAGTAACTCTTACTTTTGCTCTTCTGATATCAACAGATTACCAAACCTGGAGTCACCAGAAGAAAGTTCATTGCCTATGTATCATGGAACTGTGCAATCCCTATGGAATAGTTCTTTCAACATGTCTAACTGA 1242 0.4179 MELAPVKCELSPRNHRLLVIDGSEVIAAKCVKRRRRGSSMSVLGGNGQQAEKLEEHKQLGTATTVKRSSRFRGVSRHDLLFLGSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVFSLNSRIDRETDLLGKFMLPPGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYTIEYRGINAVTNFDLSTYIRWLRPGTHPIASHDPQPFATSNSMQTRGNIEVSNSNMHSFSSAELDSTKKQDFSKYMNPLSPCNKPSSPTALGLLLKSTVFRELMQRNLNSSSEEGEEVELKYPQEGNDGNGGTYYSENTSNSYFCSSDINRLPNLESPEESSLPMYHGTVQSLWNSSFNMSN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02457 413 SUPERFAMILY DNA-binding domain 199 247 IPR016177 GO:0003677
Vimu11g02457 413 Gene3D AP2/ERF domain 69 166 IPR036955 GO:0003700|GO:0006355
Vimu11g02457 413 Gene3D AP2/ERF domain 199 247 IPR036955 GO:0003700|GO:0006355
Vimu11g02457 413 CDD AP2 199 247 IPR001471 GO:0003700|GO:0006355
Vimu11g02457 413 SMART rav1_2 70 170 IPR001471 GO:0003700|GO:0006355
Vimu11g02457 413 SMART rav1_2 200 251 IPR001471 GO:0003700|GO:0006355
Vimu11g02457 413 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 319 - -
Vimu11g02457 413 MobiDBLite consensus disorder prediction 339 366 - -
Vimu11g02457 413 SUPERFAMILY DNA-binding domain 134 166 IPR016177 GO:0003677
Vimu11g02457 413 ProSiteProfiles AP2/ERF domain profile. 70 164 IPR001471 GO:0003700|GO:0006355
Vimu11g02457 413 MobiDBLite consensus disorder prediction 39 66 - -
Vimu11g02457 413 ProSiteProfiles AP2/ERF domain profile. 200 231 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02457 Vimu-Chr11 43141438 43143665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02457 66 295 AP2-EREBP Transcription Factor Family AT5G57390 46.122 2.39e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g02457 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02457 - - gmx:100799621 660.603