Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02455 ATGCAGAAAGCCAAGGGAACTGTTGCAGCAAGGAGACACACATCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGACAGAAAAGGAGCATGGCCATGAAGGGAGTAAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGATACTACTGTCCAGAGCTCAAGGATACCTTGATTGATCGGCGATTCACGTGTAGGGTCTGTGGGGAAAAAGGTCACAACAGAAGAACATGTAGAATGATAAGGGTAGGCCGTAGCAATGAGAGACTGATAAAACAGCATCAGTGTAGGGTCTGTGGGGAAAAGGGCCACAACAGAAGAACTTGTAGGACGTTAAGGATAAGCCTTAGAAAGGGAAGAGTGATAAAACACCGAAAGTGTAAAGTATGTCACCAATTCGGCCATAACCGCAGAACCTGTCCTGAAGTTGTTCCTAGTAAAAGAAATACGGTCTCTCGCAGACAATACAAGTGTAGGTTGTGCAAGAAAAAAGGACATAACAGTAGGACATGTCCAAGTAAGACAGATGTTACTGAACAACCTCAAGATTAA 564 0.4344 MQKAKGTVAARRHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRYYCPELKDTLIDRRFTCRVCGEKGHNRRTCRMIRVGRSNERLIKQHQCRVCGEKGHNRRTCRTLRISLRKGRVIKHRKCKVCHQFGHNRRTCPEVVPSKRNTVSRRQYKCRLCKKKGHNSRTCPSKTDVTEQPQD 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02455 187 ProSiteProfiles Zinc finger CCHC-type profile. 69 83 IPR001878 GO:0003676|GO:0008270
Vimu11g02455 187 SMART c2hcfinal6 68 84 IPR001878 GO:0003676|GO:0008270
Vimu11g02455 187 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Vimu11g02455 187 SMART c2hcfinal6 130 146 IPR001878 GO:0003676|GO:0008270
Vimu11g02455 187 SMART c2hcfinal6 41 57 IPR001878 GO:0003676|GO:0008270
Vimu11g02455 187 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Vimu11g02455 187 Gene3D - 125 186 - -
Vimu11g02455 187 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 4 88 - -
Vimu11g02455 187 SUPERFAMILY Retrovirus zinc finger-like domains 94 146 IPR036875 GO:0003676|GO:0008270
Vimu11g02455 187 SUPERFAMILY Retrovirus zinc finger-like domains 150 183 IPR036875 GO:0003676|GO:0008270
Vimu11g02455 187 Pfam Zinc knuckle 159 176 IPR025829 -
Vimu11g02455 187 ProSiteProfiles Zinc finger CCHC-type profile. 100 114 IPR001878 GO:0003676|GO:0008270
Vimu11g02455 187 SUPERFAMILY Retrovirus zinc finger-like domains 39 84 IPR036875 GO:0003676|GO:0008270
Vimu11g02455 187 Gene3D - 34 85 - -
Vimu11g02455 187 ProSiteProfiles Zinc finger CCHC-type profile. 42 57 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02455 1 145 C2H2 Transcription Factor Family AT5G20220 51.948 4.41e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02455 - - var:108323927 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02455 11 43120097 43126374 Vimu11g02455 11 43120097 43126374 ECH