Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02454 ATGTCCAACTTGCAGTTTCAACTGCACTCTCAGCCATCAACCTTGTCATCTTTGTCTTCATTATCGTCTTCTTCTCTTAAGCTATTAGCAAACCACTCTTTTTCCCCAAAGTCTCTTCCTTATAACCCTCCTAAACCCCTCTCCCTCAGATGTCGCCACTCTGACCTCTTCGACCAGAACACCTTAGCTTCCTCACAACGACCCACAAGACCCACTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACTTTGACTCCTAGGCCACCGGAATTCGTGCCGCTCGATTCAGGGGCATATAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCTGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCGGTGGGTGAAATGGGAAGTGTAATAAGCCTTGGTACAAGGGAGTCCTGTGAATTTTTTCATGATCCTTTTAAGGGCAAAAGCGATGAAGGTAAAGTCAGAAAAATTTTGAAGTTGGAGCCTCTTCCCGACGGTTCTGGGCACTTCTTTAACCTAAGAGCATATCTTTCAGTGTTAGGTATAATGAAGTACATATCTTTCTGCATAAGATGTCATGAAGTCAATACAGGTTTTTTTTCTAGTTCTGCATGGAGTACATTTCCTGCCTTCGCAAATTTTATCATGCCATACCTTCTTGGTTGGCATACCTTTGCAAACTCCATAAAGCCAGAGGACAATAGTGGAGTGAATAATGCCAACCCAAGATATGGAGGTGACTATGAATGGAACAGATAG 825 0.4388 MSNLQFQLHSQPSTLSSLSSLSSSSLKLLANHSFSPKSLPYNPPKPLSLRCRHSDLFDQNTLASSQRPTRPTASVGALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESCEFFHDPFKGKSDEGKVRKILKLEPLPDGSGHFFNLRAYLSVLGIMKYISFCIRCHEVNTGFFSSSAWSTFPAFANFIMPYLLGWHTFANSIKPEDNSGVNNANPRYGGDYEWNR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02454 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 38 274 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vimu11g02454 274 Gene3D Transcriptional Coactivator Pc4; Chain A 76 261 IPR009044 GO:0003677|GO:0006355
Vimu11g02454 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 274 IPR009044 GO:0003677|GO:0006355
Vimu11g02454 274 Pfam Whirly transcription factor 88 216 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02454 Vimu-Chr11 43110344 43113827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02454 8 274 Whirly Transcription Factor Family AT1G14410 53.933 2.00e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vimu11g02454 Whirly 1.9e-50 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02454 K26559 - gmx:100789252 389.423