Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02453 ATGGAAGTTAGCAATGAAGAAATCAGTGGCGACAAGGATCATAAGCTTGAAAGGGAAATGCGAGAGGTTGGAGAACTTTCATTGGTAAGGCTGGTAAATGATTCAACTAGTGATGAAGAGAGTGAACTTGTTTCCCTCTCTCTTGGAATTTCATCTACAGGTAAACATGAGAAGAAGAATAGAACTGAAATGATTAGAGAAAATGACGAGGATTTGAAAGAAGGACTTTCACTGGGATTAGATATAAGATTTGACCCTTCAGCATTAAAAAATCACAGCACTGAAAGTAGGTGCGATGGGGAAATGAAGGAAGAGGAACTCAGAGAGATATGGCCACCCAGTAAAGTTCTTAAGACAATGAGAACTTGGGATAAAAGTGAAGCTTCTCAACATGCTGATGTCAAGAAGGCTAGGGTTTGTATCAGAGCAAGATGTGATAACCTTACGATGAATGATGGTTGCCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGGAATCCATGTCCCCGAGCATACTATCGATGCACTGTTTCTCCATCCTGTCCTGTGAAAAAACAGGTTCAAAGATGTGCTGAAGACATGTCAATCTTGATTAGCACCTACGAAGGAACTCACAACCACCCTCTTCCTACATCAGCCACTACCATAGCCTACACAACTTCTGCTGCTGCTTCCATGCTTCAATCTCCTTCATTGACCACACAACTAGGACTAGTCAATTCAGATACTGTCCCTCTCCTCAGTTCTAATAATGTTCTTTATAACCTTAATGCTCTAAACTTCACATCAAGCTATCACCACGTTTCAAAATCACCACACTTATTCTTCCACAGCTCCTCTATTTCTACCTCTAATTCTCACCCCACAGTCACTCTTGACCTTGCCACTCCTCAAACTTCACCTCACATTGGAAATTTCACCCCAAGCTTGTCTTTCGTACCAAAATATTCATCAACCAATGTTGATTTTCCCTCCAGTACTTTTTCTCCTTTGCAATCTAGTGTGCTACATTCACCTTGTTATGGTGATTACTTAAACTATCAGGGATTGATCACCCCAAATAGAAACCTTAACGGTTTCCATACGAACACTGGAAAACAACCATTCCTGGGACATCTTTGTCGATCTAATAACATTACCAATCATGCAGTTTCTAAACAATCTTTACCTGATTCCATTGTAGCTGCATCCAAAGCTACCCCAAAATATCAATCTGCTATATTAGCAGCTGCCCTCACAGCTTATGCTGGTAATGGGGTAAGAGAAAATCATGATGAGGCCCAAAGTGCCGGTTTGGACTTAAATCTAGGTGGAGATATGTCATACACAACCAACCCAGTTTACGCTAATTCTAATGCATCAAGGTACAAGAGAATGTCATTTTCTGCTCCTACTGCTCCGAAAATAAACTCGGTCATATTTCAGCCATCACATCCATCTAAAAGTAACCTATTGTTAGACCAATAG 1470 0.4048 MEVSNEEISGDKDHKLEREMREVGELSLVRLVNDSTSDEESELVSLSLGISSTGKHEKKNRTEMIRENDEDLKEGLSLGLDIRFDPSALKNHSTESRCDGEMKEEELREIWPPSKVLKTMRTWDKSEASQHADVKKARVCIRARCDNLTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVKKQVQRCAEDMSILISTYEGTHNHPLPTSATTIAYTTSAAASMLQSPSLTTQLGLVNSDTVPLLSSNNVLYNLNALNFTSSYHHVSKSPHLFFHSSSISTSNSHPTVTLDLATPQTSPHIGNFTPSLSFVPKYSSTNVDFPSSTFSPLQSSVLHSPCYGDYLNYQGLITPNRNLNGFHTNTGKQPFLGHLCRSNNITNHAVSKQSLPDSIVAASKATPKYQSAILAAALTAYAGNGVRENHDEAQSAGLDLNLGGDMSYTTNPVYANSNASRYKRMSFSAPTAPKINSVIFQPSHPSKSNLLLDQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02453 489 Pfam WRKY DNA -binding domain 151 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02453 489 SUPERFAMILY WRKY DNA-binding domain 144 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g02453 489 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02453 489 Gene3D WRKY domain 135 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g02453 489 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g02453 489 FunFam probable WRKY transcription factor 31 135 212 - -
Vimu11g02453 489 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 38 424 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02453 Vimu-Chr11 43090049 43094196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02453 35 423 WRKY Transcription Factor Family AT5G15130 41.337 1.34e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g02453 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02453 - - vum:124844927 835.099