Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02445 ATGGGAAGACAGAGTCCTGGAAAATGGATCAGAAACTTGCTTCTGGGGAAGAAATCGTCGTCCAAGTCTAAGTCTTCAACAGAGAAAGATATTTATAAACCTTCAAGTACCAAGGATGTTCTGGTGGTGTCTTCGGAGACATCCATGTCTTCTTCCATATCTGGTGCAAATGCTATTAAAGGAAAGCTATCAGAAAAGGAAGTAGTTAGTGTATCATCAAATGATGGGACAATTCTTTCAACTGAAGATGAGCTTTCCAATGGACAATCTCATGATAATTTTTATTCTGAGGACCGTAATGAGAAAAGCAGGCTAATAAAAACAGCAATAACAACAATTCAGGCTGCAATTAGAGGCTATCAGGCGCGAGGGACATATAAAACTGTAAAAGGTATCATTCCACTGCAAGCTTATATTCGTGGCCAATTGGTTCGAAGACAAGCTATTTCTGCTTTGTATTGTGTGAAGTCAATAGTAAGATTTCAAGCATTGGCCCGTGGTTACAAGGTTAGGCACTCTGATATTGGCATTGCAGTCCAGAAACTTTTTAAGGATACTAAATTCTCGAAATCTACTGGAGTAGTTTCATCTACACAGGCAGTGAAGCTCTCAGATAATACCTTTGCTCATAAGCTTCTGGCTTCATCACCCTATGCTGTTTCTCGACGTCTCAAATATAATACTGGTGAAGCTAACTTGGTTTGGGAATGGCTTGACCGTTGGACGAAATCACACTTTTGGGTACCTCTTAAAGAAGCGCAGAGATCTGATTCAGTGTCTGATAAGAAAAATGGAAGTTCTCAAACTGTAGAAACTAATAAGGGACAAGTTAAAAAAAATGCCAGGAAAGGACCTCCTCACGATTTAGTCTCAGATTCCAACAAACATAAACGGTATCCAAAAAAGGATTCAAACCCCGCATTGCATTCAGCTAAGGAACATCCACCAAAGGAACTTGAGAAAAGGAGTTCTAAAAAATCTCAAATTCAGAATGTTTCTGATAAGTCGGAGGCTTCTGATGAGAAGAGAAGACTCGTCGCTAAAAAAGTTTCAGATCATGCTGTTCAAGAGGAGGATGCTGGTGCTTCATCAGAGAAGATGAAATCTTTGGCAGTGTCAAAGTCAGAAGAGTGTGATCTTGTGAAAAGTCTTATACAGCAAGCACAAGAGCATGATAATAATGAGCCATGTAATGGTACTGATTCTCCCTTGCAGCCTAGTTTGATGAATAGTAAAGATGGAGGAGTGATTGAGGAGATGAATAATGATGTGAAGAGTAAGAATTTCCAGAGAAGAGCTTCCCTGCCTGCTAATTTTACAGATCTTGAAAATGTGTTGCATGATAACACTCCAAGACTTCCAAGTTACATGGCTCCCACTGAATCTACAAAAGCTAAGCTAAGAGGACAGTGCTCTCCACGGTCTGTTAGTGATCTGGCAGATGTAAGCAGTATAACTCGCCGGCTTTCGCTTTCATCTTCGCTTAGTGTCAAGCTAGGTTCATTCTCTCCACGATCAGATAGATTGGCTGCCTTGACCAACAAGATAAGGACTGATAGATCTCTATCATCTTCAAGGGATGGAACTCGTAAGAATTTAGGATTTTCGACCCTTTTCACCTATTCATGA 1629 0.4027 MGRQSPGKWIRNLLLGKKSSSKSKSSTEKDIYKPSSTKDVLVVSSETSMSSSISGANAIKGKLSEKEVVSVSSNDGTILSTEDELSNGQSHDNFYSEDRNEKSRLIKTAITTIQAAIRGYQARGTYKTVKGIIPLQAYIRGQLVRRQAISALYCVKSIVRFQALARGYKVRHSDIGIAVQKLFKDTKFSKSTGVVSSTQAVKLSDNTFAHKLLASSPYAVSRRLKYNTGEANLVWEWLDRWTKSHFWVPLKEAQRSDSVSDKKNGSSQTVETNKGQVKKNARKGPPHDLVSDSNKHKRYPKKDSNPALHSAKEHPPKELEKRSSKKSQIQNVSDKSEASDEKRRLVAKKVSDHAVQEEDAGASSEKMKSLAVSKSEECDLVKSLIQQAQEHDNNEPCNGTDSPLQPSLMNSKDGGVIEEMNNDVKSKNFQRRASLPANFTDLENVLHDNTPRLPSYMAPTESTKAKLRGQCSPRSVSDLADVSSITRRLSLSSSLSVKLGSFSPRSDRLAALTNKIRTDRSLSSSRDGTRKNLGFSTLFTYS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02445 542 ProSiteProfiles IQ motif profile. 106 130 IPR000048 GO:0005515
Vimu11g02445 542 SMART iq_5 153 175 IPR000048 GO:0005515
Vimu11g02445 542 SMART iq_5 105 127 IPR000048 GO:0005515
Vimu11g02445 542 SMART iq_5 128 149 IPR000048 GO:0005515
Vimu11g02445 542 MobiDBLite consensus disorder prediction 260 275 - -
Vimu11g02445 542 MobiDBLite consensus disorder prediction 276 328 - -
Vimu11g02445 542 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Vimu11g02445 542 MobiDBLite consensus disorder prediction 335 368 - -
Vimu11g02445 542 PANTHER IQ-DOMAIN 5-RELATED 1 493 - -
Vimu11g02445 542 MobiDBLite consensus disorder prediction 253 368 - -
Vimu11g02445 542 MobiDBLite consensus disorder prediction 1 36 - -
Vimu11g02445 542 Pfam IQ calmodulin-binding motif 156 171 IPR000048 GO:0005515
Vimu11g02445 542 Pfam IQ calmodulin-binding motif 135 147 IPR000048 GO:0005515
Vimu11g02445 542 Pfam IQ calmodulin-binding motif 109 123 IPR000048 GO:0005515
Vimu11g02445 542 Pfam Protein of unknown function (DUF4005) 448 509 IPR025064 -
Vimu11g02445 542 Gene3D - 104 152 - -
Vimu11g02445 542 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02445 Vimu-Chr11 43000831 43004039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02445 1 531 IQD Protein Family AT1G14380 33.333 5.11e-56 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02445 - - vun:114179925 776.163