Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02440 ATGTCCACATCCACCAACGTCGTCGTTCTAGACAACGGCGGTGGGTTAATCAAGGCGGGCCTGGGCGGCGAACGCGACCCCTTCGCTGTGGTCCCGAACTGTCTCTACCGTCCCCCGGCCTCTAAGAAATGGCTCCACCTGACCTCCGGCGACGAGGACCTGACGTCCGCCGCTGTGCGCCGCCCCATGGACAGAGGATACCTGATAAACCCGGAGCTACAGCGCGAAATCTGGTCGCACCTTTTCAACTCCGTCCTCCGTATAACGCCCTCGCAGTCCTCGCTCCTCCTCACGGAACCCCTCTTCACACTCCCCTCCATCCAACGCTCCGTCGACGAGCTTGTCTTCGAGGAGTTCAACTTCCGGGCCCTCTACGTGGCCCATCCTCCCGCCCTAGTCCACCTCCACGAGGCCACCCGCCGGCCCAGTGGGCTTCTCTCCCGGGCCCAGTGCAGTCTCGTCGTGGATGCAGGGTTCTCCTTCACCCACGCTTCCCCCGTCTTCCACAACTTCCCACTCAATTATGCCGTGAGGAGGATTGACTTGGGTGGCAAGGCCCTCACCAACTACCTCAAGGAACACGTCTCCTTCCGCTCCGTCAACGTCATGGAAGAGACCTTCATCATCGACGACGTCAAGGAGAAGCTCTGCTTCGTCTCCCTCGACGTCGACCGCGATCTCTCCATCGCCAGGAAGAGTGGGAAAGAGAATCTATTCAGGTGCACCTATGTGCTTCCGGATGGTGTCACACACACAAAGGGGTTTGTTAAGTACCCAGACCAGGCACGGCGGTATCTTGCATTGAGGGAGAGCAGCCTGCCTTCTTCGCTGCCAGTGGAGGCAGACGGGGTTATGAATTCCTCGGAAATTGCCGAGCAGCCAGAGGACAGAAAAAGAGTTGATTTGTCAAAAAATGAGTTTGACTTGACCAATGAGCGGTTTCTTGTGCCAGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAAGCTGGGCTAGCAGAATGCATTGTGCGGGCTGTTAATGCGTGCCACCCGCATCTCCATCCTGTACTCTACGAAAGCATCATATTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCTGAGAGATTAGAGAGGGAGCTTCGACCTCTAGTTCCTGATGACTATAATGTGGAGATAACAACTCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGGTCACTGTTGGCATCAAGTCCAGATTTTGAAGCAATGTGTGTGACGAAGTCTGAGTATGAGGAACTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA 1308 0.5489 MSTSTNVVVLDNGGGLIKAGLGGERDPFAVVPNCLYRPPASKKWLHLTSGDEDLTSAAVRRPMDRGYLINPELQREIWSHLFNSVLRITPSQSSLLLTEPLFTLPSIQRSVDELVFEEFNFRALYVAHPPALVHLHEATRRPSGLLSRAQCSLVVDAGFSFTHASPVFHNFPLNYAVRRIDLGGKALTNYLKEHVSFRSVNVMEETFIIDDVKEKLCFVSLDVDRDLSIARKSGKENLFRCTYVLPDGVTHTKGFVKYPDQARRYLALRESSLPSSLPVEADGVMNSSEIAEQPEDRKRVDLSKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNACHPHLHPVLYESIILTGGSTLFPQFAERLERELRPLVPDDYNVEITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02440 435 Gene3D Actin; Chain A, domain 4 188 250 - -
Vimu11g02440 435 Gene3D - 127 187 - -
Vimu11g02440 435 SUPERFAMILY Actin-like ATPase domain 150 434 IPR043129 -
Vimu11g02440 435 FunFam Actin-related protein 6 127 187 - -
Vimu11g02440 435 SMART actin_3 5 434 IPR004000 -
Vimu11g02440 435 SUPERFAMILY Actin-like ATPase domain 4 135 IPR043129 -
Vimu11g02440 435 FunFam ARP5 actin-related protein 5 homolog 331 397 - -
Vimu11g02440 435 Gene3D - 8 126 - -
Vimu11g02440 435 Pfam Actin 4 434 IPR004000 -
Vimu11g02440 435 Gene3D Actin; Chain A, domain 2 35 62 - -
Vimu11g02440 435 CDD NBD_sugar-kinase_HSP70_actin 8 191 - -
Vimu11g02440 435 FunFam Putative actin-related protein 5 398 426 - -
Vimu11g02440 435 Gene3D - 398 426 - -
Vimu11g02440 435 Gene3D - 331 397 - -
Vimu11g02440 435 FunFam Actin-related protein 6 188 249 - -
Vimu11g02440 435 Gene3D Actin; Chain A, domain 4 291 330 - -
Vimu11g02440 435 PANTHER ACTIN 8 426 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02440 Vimu-Chr11 42904530 42908095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02440 8 434 Cytoskeleton Gene Families AT5G09810 27.689 4.13e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02440 K11662 - gmx:100819827 781.556