Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02439 ATGACCAACGAGAAGATCCCATTCGCATTAAAGAGAGAAAGAGATTGGAAAATGAGGGGTAATATAGTAAATGCAGAATGTGAAGAGCCCGTCATGAGAGGGCAGTGTGGGATAATGGGTAACTGTCTAGCTTCTTCGGCTAAAGTAGAAGCAGCTCACAGTTCCAGAACAACTTCTCGAGTTTCGAAGACTAGTCCTTCATCTGTTCCTTCCAACTTATCTATTCAGTCATACTGCGAAGCAAGTGATGTCTCAAGTCTCCCCACACCAAGGTCCGAGGGTGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTGCCTTTAATGAGCTAAAGAATGCCACCAGAAACTTTCGCCCCGACAGTCTTCTTGGGGAAGGAGGATTTGGTTGTGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTAGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGGCAACTTCACCATCAGAATCTTGTTAAATTGATTGGATACTGCGTGGAGGGAGAGAACCGGCTGTTGGTCTATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTATTTAGAAGGGGACTACAACCTCTATCTTGGTCAGTGAGAATGAAAGTAGCCATTGGTGCTGCCAGAGGACTCTCTTTTCTTCATAATGCCCAGTCTCAAGTCATATACCGTGATTTTAAAGCATCTAATATCCTACTTGACGCTGATTTCAATCCTAAACTCTCTGATTTTGGTTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTATCTACTCAAGTTATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGTGTTGTGTTGCTTGAGTTATTGTCTGGTAGACGTGCAGTTGACAGAACAAAAGCTGGTGTGGAACAGAATCTAGTAGAGTGGACAAAACCATATTTGGGTGACAAAAGAAAACTATTTCGGATTATGGACACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCTTACATGGCTGCCACTCTTGCGCTACAATGCCTAAATCGCGAAGCCAAGGCAAGACCTCCAATGACAGAGGTTTTAGAAACTCTTGAGCAGATTGCAGCCTCAAAAACTGTAGGGAGAAACAACCAATCGGAACAGAAGAGAGTCCATATTCCTGCAAGAAAGTGTAAAGTGCAAATGGGTGCCCTTTGA 1296 0.4398 MTNEKIPFALKRERDWKMRGNIVNAECEEPVMRGQCGIMGNCLASSAKVEAAHSSRTTSRVSKTSPSSVPSNLSIQSYCEASDVSSLPTPRSEGEILSSPNLKAFAFNELKNATRNFRPDSLLGEGGFGCVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGLQPLSWSVRMKVAIGAARGLSFLHNAQSQVIYRDFKASNILLDADFNPKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQNLVEWTKPYLGDKRKLFRIMDTKLGGQYPQKGAYMAATLALQCLNREAKARPPMTEVLETLEQIAASKTVGRNNQSEQKRVHIPARKCKVQMGAL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02439 431 ProSiteProfiles Protein kinase domain profile. 117 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g02439 431 PANTHER OS01G0588500 PROTEIN-RELATED 65 401 - -
Vimu11g02439 431 FunFam Serine/threonine-protein kinase BIK1 84 202 - -
Vimu11g02439 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Vimu11g02439 431 Pfam Protein tyrosine and serine/threonine kinase 121 397 IPR001245 GO:0004672|GO:0006468
Vimu11g02439 431 Gene3D Phosphorylase Kinase; domain 1 93 202 - -
Vimu11g02439 431 FunFam Probable serine/threonine-protein kinase PBL8 203 416 - -
Vimu11g02439 431 ProSitePatterns Protein kinases ATP-binding region signature. 123 156 IPR017441 GO:0005524
Vimu11g02439 431 SUPERFAMILY Protein kinase-like (PK-like) 91 397 IPR011009 -
Vimu11g02439 431 Gene3D Transferase(Phosphotransferase) domain 1 203 426 - -
Vimu11g02439 431 CDD STKc_IRAK 123 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02439 Vimu-Chr11 42896665 42899507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02439 93 397 Glycoside Hydrolase AT3G07070 52.273 3.97e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g02439 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02439 - - gmx:100305401 701.434