Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02437 ATGACGCCGCAAGATTTGAAGCTGCAGCATAATGAAGAGTCCACGAAGAAGGAGCAGAGTGAAGAATCTAAAAACAAGGAACACAATGAAGAATCTAAAAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGGGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTTAAAGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACATACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCCGTGAAAAACCGTTTCTCGACACTCTGCAGAAAGAAAGAAAAATATGCAGCATTAACAAAAGAGAACAGTACTTCATACATCAATTCAAATAGCAAGAGAATTATGTTCCAACATTATAATAATATGGATGCAAAAGCTGAATCTGGAGTACCTATTAAAAAGATGAGGAGGGCCCATATCCCTGATGATGCAGAAAAGAGCGAATTTGGAGACCGATCACATTTACGTAATGGAACTCCAATAAATCAACAGCAAAGAGCACCATTTGCAGTATTAGCTCAAAACTCTCATAACTCAAACAACTTGCCAAACCAGCAGCATGATTGCAATCCCAAGTTTGATTCTGTCCAGGATGACCAGATTCAAGGAACATTTCTCAAAAGGGATGACCCAAAGAGAAGTGTATTGATGGAACAGGCAGAGTTATTAAGTTCACTAGCTCTAAAAGTTGATACCGAAAACGTGGACCAAAGTCTTGAACACACTTGGAAGGTTCTTCAAGAGTTTCTGAACCGAAACAAAGAATCAAACATCCCTGGTCACAAGATTTCAGATTTACGGCTTGTTGATAAAGATATCAATAAGGACTTGAAAAGCAGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGAACAGTACGAAGATTCTCCAGCCAGTTCCGGATACAGTACAGAATCAACTTTCCTGGGTCAGTCAGCCGTTGATAATTCAGAGCACACATTGCATCAAGATATTGGAACTGAAATGAAGTCTGAACAAGTTGGAGATGAAAAAGGAGTAGGCAGAGATGATAAAGGGGTTCTTTGTACTGCAAATGTAGATCAAGATGTACTGCCATATTGTGAGGAACAGATAAACAATGATGGAATTGTTTCTACCTCATCAAGATTGGAGTTCAACTCCCCTATTCAAGTAACCCCTCTGTTCAGATCCTTGGCAGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTATGAGCTGGGATTTTGAAATGCTTAGGCAATCCCTACCTACAATTGTTGAAGCTGGTAAAAAAGAGGAAAGGAACTTCCTAAGGAAAACACTAGGAGTGGAGTCTCCTTCCATCAACACAAGTGCTGACTCATCTCAACCACCACCCTGCAAAAGAGCCCTACTACCAAGTCTATGA 1533 0.4051 MTPQDLKLQHNEESTKKEQSEESKNKEHNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKYAALTKENSTSYINSNSKRIMFQHYNNMDAKAESGVPIKKMRRAHIPDDAEKSEFGDRSHLRNGTPINQQQRAPFAVLAQNSHNSNNLPNQQHDCNPKFDSVQDDQIQGTFLKRDDPKRSVLMEQAELLSSLALKVDTENVDQSLEHTWKVLQEFLNRNKESNIPGHKISDLRLVDKDINKDLKSSNEEGQACWRQVEQYEDSPASSGYSTESTFLGQSAVDNSEHTLHQDIGTEMKSEQVGDEKGVGRDDKGVLCTANVDQDVLPYCEEQINNDGIVSTSSRLEFNSPIQVTPLFRSLAAGIPSPQFSESMSWDFEMLRQSLPTIVEAGKKEERNFLRKTLGVESPSINTSADSSQPPPCKRALLPSL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02437 510 ProSiteProfiles Myb-like domain profile. 42 85 IPR001005 -
Vimu11g02437 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 89 IPR017930 -
Vimu11g02437 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Vimu11g02437 510 FunFam Transcription factor MYB124 34 90 - -
Vimu11g02437 510 MobiDBLite consensus disorder prediction 487 510 - -
Vimu11g02437 510 Gene3D - 29 90 - -
Vimu11g02437 510 SUPERFAMILY Homeodomain-like 38 132 IPR009057 -
Vimu11g02437 510 SMART sant 90 138 IPR001005 -
Vimu11g02437 510 SMART sant 38 87 IPR001005 -
Vimu11g02437 510 CDD SANT 41 85 IPR001005 -
Vimu11g02437 510 Pfam Myb-like DNA-binding domain 42 102 - -
Vimu11g02437 510 MobiDBLite consensus disorder prediction 1 36 - -
Vimu11g02437 510 Coils Coil 11 31 - -
Vimu11g02437 510 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Vimu11g02437 510 PANTHER MYB PROTEIN-RELATED 41 220 - -
Vimu11g02437 510 MobiDBLite consensus disorder prediction 9 36 - -
Vimu11g02437 510 Gene3D - 92 165 - -
Vimu11g02437 510 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02437 Vimu-Chr11 42852229 42856850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02437 28 336 MYB Transcription Factor Family AT2G02820 58.917 1.17e-126 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g02437 Myb_DNA-bind_6 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02437 K09422 - gmx:100807667 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02437 11 42852229 42856850 Vimu11g02437 11 42852229 42856850 ECH