Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02436 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGAAGACCATCAACCTCCACCTTCACTCAACTCAATTATTACTTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCGGGGATTGAACTTGGAGAAGAGGCTAATGCCGAGGAGGACTTATCTGATGACGGATCACAAGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGAGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTACGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGATATTGGCACTGAAAAGCAGAGAACCCACCGAATCCATCAACCTCAATAAAGAAACTGAGGGCTCCAGTAGCAATAGAAGTGAGAACAGCTCAGAAATCAAGTTGGATATCTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAAACCTCTTTCCATCTTCTACTAGACCAACAGGAGTTGCTCAGCTTTTCCAAACCGCTTCAAGGCCAGAACTTCAGTGCCAAAAGATTGATCACATGGTCAAAGAAGAGAGCTTAAGCAACATGTTCTGTGGCATTGATGATCAATCTGGCCTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 837 0.4504 MAFFPANFMLQTPHQEDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNSRNLFPSSTRPTGVAQLFQTASRPELQCQKIDHMVKEESLSNMFCGIDDQSGLWPWLEQQHFN 278
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02436 278 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Vimu11g02436 278 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Vimu11g02436 278 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Vimu11g02436 278 Gene3D - 67 136 - -
Vimu11g02436 278 Coils Coil 122 170 - -
Vimu11g02436 278 CDD homeodomain 75 131 IPR001356 GO:0003677
Vimu11g02436 278 MobiDBLite consensus disorder prediction 58 77 - -
Vimu11g02436 278 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Vimu11g02436 278 SMART HOX_1 73 134 IPR001356 GO:0003677
Vimu11g02436 278 MobiDBLite consensus disorder prediction 1 26 - -
Vimu11g02436 278 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Vimu11g02436 278 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Vimu11g02436 278 MobiDBLite consensus disorder prediction 178 225 - -
Vimu11g02436 278 MobiDBLite consensus disorder prediction 175 225 - -
Vimu11g02436 278 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Vimu11g02436 278 MobiDBLite consensus disorder prediction 12 26 - -
Vimu11g02436 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 243 IPR045224 GO:0003700
Vimu11g02436 278 FunFam Homeobox-leucine zipper protein ATHB-13 67 134 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu11g02436 Vimu-Chr11 42761491 42763159 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02436 1 278 Homeobox Transcription Factor Family AT1G69780 63.051 5.57e-117 336
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu11g02436 Homeodomain 1.4e-15 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02436 K09338 - gmx:100801479 536.184