Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02431 ACACCTTATCTATATATCTATCTACCTCTTTCTGACACACCTACTCTTTCATTAACAATGTCTACCAGAAGATCTCGTTCCAGACAAACGCCAGTTTCCACTCAGATCACTGATGCTCAGATCACTGATCTCGTTTCCAAGTTACAACACCTTATACCTGAGCTTCGCGCAAGACGTTCCGACAAGGTTTCGGCTTCTAAGGTGTTGCAGGAGACTTGCAACTACATAAAAAGCTTGCACAGAGAGGTTGATGACTTAAGTGACCGGTTGTCACAACTTTTGGCCACCACAGACTCCAACAGTGCCCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 339 0.4395 TPYLYIYLPLSDTPTLSLTMSTRRSRSRQTPVSTQITDAQITDLVSKLQHLIPELRARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02431 112 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 79 IPR011598 GO:0046983
Vimu11g02431 112 Gene3D - 38 108 IPR036638 GO:0046983
Vimu11g02431 112 CDD bHLH_AtPRE_like 33 96 - -
Vimu11g02431 112 Pfam Helix-loop-helix DNA-binding domain 40 80 IPR011598 GO:0046983
Vimu11g02431 112 Coils Coil 76 96 - -
Vimu11g02431 112 PANTHER TRANSCRIPTION FACTOR PRE 20 112 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vimu11g02431 112 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 101 IPR036638 GO:0046983
Vimu11g02431 112 FunFam Transcription factor ILI6 26 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02431 Vimu-Chr11 42658397 42659309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02431 20 112 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 3.95e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02431 HLH 4.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02431 - - gmx:100791371 157.532