Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02418 ATGAATGTTATTGATCGATGTTGGAGACCAAATCCCAAATGGAGGAGACATCGATCTCAGTTAGCCACATGTTTTGTGGGCAATGCTGGTAAGATGATAAATAACATTGGTAATGACCTTATTCATTATAAAGTTACTGACTCTAGTGATGATCCTATAAACCCAAAACCCAACACCTTGAGATATGGAACTTCTGTTATTCAAGGTAAAGTATGGATCACATTCCAGAAAGACATGCTCATTACATTAAAGAAACCACTTCTCATTAGCAGTTTTACTACTATCGATGGTCGAGGTGTTAACGTCCACATTGCTAATAATGCATGTTTAATGATCTTTAAGGCAACCAACAGAATTATCCATAACATTCGAGTTCATCACTGTAAACCCCAAGCCCCTGGGATCGTAATGGGGCCCGAAGGAAAGGTGATTCCTTTAGGTCATGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACATTGTATGATTGCCAAGACGGTTTGCTAGATGTAACACGAGGTTCCACTGATATGACTATCCCTAATAATTGGTTCAAAAATCAAGATAAAGTCATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAAAATATGAAGGTTAGAGTAGTGTATAACCATTTTGGACCTAATTGTAATCAACGTCTGCCAAGGATTCGTCATGGATATGCACATGTAGCCAATAATATTTATCAAGGATGGCTTCAATATGCCATTGATGGAAGCATGGAACCAAGCCTCAAAAGTGAAGCTAATCTCTTTGTAGCACCAACCATAGGAAATAAGGAGGATGATAAAAGTGGAGATAGATTGGATTTTCATTCAGTAAAGGATATGTTTGAAAATGGAACTTCATTCACTGTAACAAAAGGAGGACGTGTGCAAAAACCAAATTATAGCAAGGAACAAAATTTCAAAGTTGTTGATGCCAAATTTCGTCAAAGTGTCTTCTACAAGCACAACTCCCGTTTCGGACTGGAGAGGATGATATCTAAGGAGTTATTGGCTTGTGAGAGTTTGAAGGCAGGATCATGA 1080 0.3806 MNVIDRCWRPNPKWRRHRSQLATCFVGNAGKMINNIGNDLIHYKVTDSSDDPINPKPNTLRYGTSVIQGKVWITFQKDMLITLKKPLLISSFTTIDGRGVNVHIANNACLMIFKATNRIIHNIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDMTIPNNWFKNQDKVMLLGHDDGYVRDKNMKVRVVYNHFGPNCNQRLPRIRHGYAHVANNIYQGWLQYAIDGSMEPSLKSEANLFVAPTIGNKEDDKSGDRLDFHSVKDMFENGTSFTVTKGGRVQKPNYSKEQNFKVVDAKFRQSVFYKHNSRFGLERMISKELLACESLKAGS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02418 359 SMART amb_all 78 275 IPR002022 -
Vimu11g02418 359 SUPERFAMILY Pectin lyase-like 2 312 IPR011050 -
Vimu11g02418 359 Gene3D - 1 337 IPR012334 -
Vimu11g02418 359 Pfam Pectate lyase 87 269 IPR002022 -
Vimu11g02418 359 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Vimu11g02418 359 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Vimu11g02418 359 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Vimu11g02418 359 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Vimu11g02418 359 PRINTS Pollen allergen Amb family signature 49 74 IPR018082 -
Vimu11g02418 359 PANTHER PECTATE LYASE 18-RELATED 1 328 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02418 Vimu-Chr11 42121849 42126248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02418 32 278 Polysaccharide Lyase AT5G09280 69.231 2.39e-135 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02418 K01728 - gmx:100780437 576.63