Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02390 ATGGTCGTCTCCAATGGTTTGAGGGATGTTGTGTATGCTTCACTTCTGAGGGTTCTTCACGGTCGGAAATGGCTGCTATTGTACAGGTATGTATGTCTACTAAGGATGAATGTGAAGGCATTTGGAACTCTTCTTGTTGATTGTGCTGTTCTGAGGATAAGTTTGAAACTCTTCTTGTTTATTAATGTTTGTGCAGCACTTCGAAGCATGGTATATCACCTTCAACTCTCTATTGAAGAAGCATGCTTTAGCCCGGATATGTGGCCACACCGTGCCCCGAAGTTGCACTTCAATTGTTCGGAGTACACCTATGCAATTGACGTTTGGTCTGTTGGTTGTATATTTGGTGAAATTTTGACCAGGGAACCCTTGTTTCCTGGGAAAGATTATGTTCTTGGGAAAAGATTATGTTCTAATAATAACCGACGCATTTTTATCAAAGAAAATATTTTTGTCGGTAATTGTAATTTACCGACGGATTTTATCGACGGAATTCATTTGTTTTTCTTGTCGACGGAAATTACCGGCGGAATCATTACAGAAGGAATAATCCGTCGTTAA 561 0.3993 MVVSNGLRDVVYASLLRVLHGRKWLLLYRYVCLLRMNVKAFGTLLVDCAVLRISLKLFLFINVCAALRSMVYHLQLSIEEACFSPDMWPHRAPKLHFNCSEYTYAIDVWSVGCIFGEILTREPLFPGKDYVLGKRLCSNNNRRIFIKENIFVGNCNLPTDFIDGIHLFFLSTEITGGIITEGIIRR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02390 186 Gene3D Transferase(Phosphotransferase) domain 1 90 131 - -
Vimu11g02390 186 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 90 129 - -
Vimu11g02390 186 SUPERFAMILY Protein kinase-like (PK-like) 90 131 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02390 Vimu-Chr11 41597022 41599814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02390 90 145 MAP Kinase Gene Family AT1G01560 66.071 8.98e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu11g02390 None None None